Example 📓 Jupyter notebooks that demonstrate how to build, train, and deploy machine learning models using 🧠 Amazon SageMaker.

Biological foundation modeling from molecular to genome scale

Chai-1, SOTA model for biomolecular structure prediction

PDEBench: An Extensive Benchmark for Scientific Machine Learning

🔅 Shapash: User-friendly Explainability and Interpretability to Develop Reliable and Transparent Machine Learning Models

Primary RNA sequence model

Primary RNA sequence model

Area-weighted venn-diagrams for Python/matplotlib

🥞 The sweeter pytest snapshot plugin

Python interactive dashboards for learning data science

Well-documented Python demonstrations for spatial data analytics, geostatistical and machine learning to support my courses.

Perplexica is an AI-powered search engine. It is an Open source alternative to Perplexity AI

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Python renderer for OpenStreetMap with custom icons intended to display as many map features as possible

Renders music in HTML.

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

A library of free open source icons for science illustrations in biology and chemistry

This Google colab notebook, allows for conservation analysis of user input genes, on their local machine. It relies on the MMSeq2 introduced by https://www.nature.com/articles/s41592-022-01488-1

List of Computer Science courses with video lectures.

AniPortrait: Audio-Driven Synthesis of Photorealistic Portrait Animation

Latte: Latent Diffusion Transformer for Video Generation.

Rapid generation of high-quality structure figures for publication with PyMOL-PUB

Open-source personal bookmarks search engine

List of Molecular and Material design using Generative AI and Deep Learning

A curated list of resources for using LLMs to develop more competitive grant applications.

Meditron is a suite of open-source medical Large Language Models (LLMs).

🦉 Data Versioning and ML Experiments

📚 Introduction to Modern Statistics - A college-level open-source textbook with a modern approach highlighting multivariable relationships and simulation-based inference. For v1, see https://openin…

ripgrep recursively searches directories for a regex pattern while respecting your gitignore