chapmanb
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bcbb Public
Incubator for useful bioinformatics code, primarily in Python and R
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dotfiles Public
~chapmanb dotfile organization for backup and sychronization
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cloudbiolinux Public
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
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clj-blend Public
Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j
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zmk-architeuthis-dux Public
Forked from dxmh/zmk-architeuthis-duxZMK keyboard firmware shield for Architeuthis Dux
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bcc2020.github.io Public
Forked from bcc2020/bcc2020.github.ioWebsite for #BCC2020
CSS MIT License UpdatedJul 9, 2020 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
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staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 24, 2019 -
arvados Public
Forked from arvados/arvadosAn open source platform for managing and analyzing biomedical big data
Ruby Other UpdatedFeb 24, 2019 -
Platypus Public
Forked from andyrimmer/PlatypusPlatypus Variant Caller
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bcbio.prioritize Public
Prioritize small variants, structural variants and coverage based on biological inputs
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cnvkit Public
Forked from etal/cnvkitCopy number variant detection from targeted DNA sequencing
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seqcluster Public
Forked from lpantano/seqclustersmall RNA analysis from NGS data
HTML MIT License UpdatedJan 13, 2019 -
mirtop Public
Forked from miRTop/mirtopcommand lines tool to annotate miRNAs with a standard mirna/isomir naming
Python MIT License UpdatedJan 13, 2019 -
sbg-cwl-runner Public
Forked from kghose/sbg-cwl-runnerA CWL Runner for SBG platform
Python Apache License 2.0 UpdatedJan 1, 2019 -
bcbio.run Public
Idempotent, transactional runs of external command line programs
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TitanCNA Public
Forked from gavinha/TitanCNAAnalysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
R GNU General Public License v3.0 UpdatedDec 2, 2018 -
PureCN Public
Forked from lima1/PureCNCopy number calling and variant classification using targeted short read sequencing
R Artistic License 2.0 UpdatedOct 30, 2018 -
In-depth-NGS-Data-Analysis-Course Public
Forked from hbctraining/In-depth-NGS-Data-Analysis-CourseMaterials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
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truvari Public
Forked from ACEnglish/truvariSVBenchmarkingTool
Python MIT License UpdatedSep 24, 2018 -
VarDictJava Public
Forked from AstraZeneca-NGS/VarDictJavaVarDict Java port
Java UpdatedSep 18, 2018 -
dx-cwl Public
Forked from dnanexus-archive/dx-cwlImport and run CWL workflows on DNAnexus (alpha)
Python Apache License 2.0 UpdatedAug 29, 2018 -
workflow-service Public
Forked from common-workflow-language/workflow-serviceImplementation of the GA4GH Workflow Execution Service, a REST service for running workflows
Python Apache License 2.0 UpdatedAug 17, 2018 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
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DKFZBiasFilter Public
Forked from DKFZ-ODCF/DKFZBiasFilterPython GNU General Public License v3.0 UpdatedJun 22, 2018 -
galaxy-hub Public
Forked from galaxyproject/galaxy-hubGalaxy Community Hub
HTML UpdatedJun 21, 2018 -
peddy Public
Forked from brentp/peddygenotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
Jupyter Notebook MIT License UpdatedMay 30, 2018 -
smoove Public
Forked from brentp/smoovestructural variant calling and genotyping with existing tools, but, smoothly.
Go Apache License 2.0 UpdatedMar 21, 2018