Tutorial on large language models for genomics

Get up and running with Llama 3.3, DeepSeek-R1, Phi-4, Gemma 3, and other large language models.

Library for clinical NLP with spaCy.

GPT RStudio addins that enable GPT assisted coding, writing & analysis

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

muon is a multimodal omics Python framework

Example code used in my videos

Bioinformatics I/O libraries in Rust

A helm plugin that shows a diff explaining what a helm upgrade would change

Declaratively deploy your Kubernetes manifests, Kustomize configs, and Charts as Helm releases. Generate all-in-one manifests for use with ArgoCD.

A Cloud Native Batch System (Project under CNCF)

Module to Automatically maximize the utilization of GPU resources in a Kubernetes cluster through real-time dynamic partitioning and elastic quotas - Effortless optimization at its finest!

The API traffic analyzer for Kubernetes providing real-time K8s protocol-level visibility, capturing and monitoring all traffic and payloads going in, out and across containers, pods, nodes and clu…

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

GTEx & TOPMed data production and analysis pipelines

Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue

Simulation of rare and common variants based on 1000 genomes data

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

Tools for working with genomic and high throughput sequencing data.

Microsatellite Analysis for Normal-Tumor InStability

The Pharmacogenomic Clinical Annotation Tool

Tools for processing and analyzing structural variants.

🧬 gget enables efficient querying of genomic reference databases

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

Long read based human genomic structural variation detection with cuteSV

Battenberg R package for subclonal copynumber estimation

This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operate Amazon Omics workflow easily and check the run command sta…

Locally run an Assistant-Tuned Chat-Style LLM

GPT4All: Run Local LLMs on Any Device. Open-source and available for commercial use.