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Software gardening...
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Software gardening...
49 followers · 107 following

Achievements

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Achievements

Achievement: Pair Extraordinairex4Achievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx3

Organizations

@conda-forge @cytomining @sphinx-contrib @University-of-Colorado-Anschutz-Denver @UCBoulder @CU-DBMI @WayScience @software-gardening

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  • d33bs Public

    1 Apache License 2.0 Updated Mar 2, 2025

  • pycytominer Public

    Forked from cytomining/pycytominer

    Python package for processing image-based profiling data

    Python BSD 3-Clause "New" or "Revised" License Updated Feb 26, 2025

  • bssw.io Public

    Forked from betterscientificsoftware/bssw.io

    Better Scientific Software Homepage

    Python Other Updated Feb 26, 2025

  • manubot-ai-editor Public

    Forked from manubot/manubot-ai-editor
    Python Updated Feb 22, 2025

  • dependabot-core Public

    Forked from dependabot/dependabot-core

    🤖 Dependabot's core logic for creating update PRs.

    Ruby MIT License Updated Feb 20, 2025

  • almanac Public

    Forked from software-gardening/almanack

    An open-source handbook of applied guidance and tools for sustainable software development and maintenance.

    BSD 3-Clause "New" or "Revised" License Updated Feb 20, 2025

  • CytoDataFrame Public

    Forked from WayScience/CytoDataFrame

    An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

    BSD 3-Clause "New" or "Revised" License Updated Feb 18, 2025

  • CytoTable Public

    Forked from cytomining/CytoTable

    Transform data for processing image-based profiling readouts with Pycytominer.

    Python BSD 3-Clause "New" or "Revised" License Updated Feb 18, 2025

  • citation-file-format Public

    Forked from citation-file-format/citation-file-format

    The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.

    Python Creative Commons Attribution 4.0 International Updated Feb 16, 2025

  • nVis Public

    Forked from WayScience/nViz

    A tool for creating and visualizing n-dimensional microscopy images.

    Python BSD 3-Clause "New" or "Revised" License Updated Feb 16, 2025

  • wall-of-software Public

    Forked from CU-DBMI/wall-of-software

    A list of tools, packages, workflows, resources, and other software developed at or in collaboration with DBMI

    JavaScript Updated Feb 7, 2025

  • coSMicQC Public

    Forked from WayScience/coSMicQC

    coSMicQC is a software tool for single-cell quality control of morphology datasets.

    Python BSD 3-Clause "New" or "Revised" License Updated Feb 4, 2025

  • pre-commit-code-coverage-update Public

    Pre-commit hook to check whether your code coverage report is up to date and update it if necessary.

    BSD 3-Clause "New" or "Revised" License Updated Jan 27, 2025

  • demo-uca-isilon-python Public

    Forked from WayScience/demo-uca-isilon-python

    Demonstrating capabilities with the University of Colorado Anschutz (UCA) Isilon storage solution using Python.

    BSD 3-Clause "New" or "Revised" License Updated Jan 25, 2025

  • CPBS7601 Public

    Forked from WayScience/CPBS7601

    Course on computing skills in biomedical informatics

    Jupyter Notebook BSD 3-Clause "New" or "Revised" License Updated Jan 14, 2025

  • pylint Public

    Forked from pylint-dev/pylint

    It's not just a linter that annoys you!

    Python GNU General Public License v2.0 Updated Jan 14, 2025

  • JUMP-single-cell Public

    Forked from WayScience/JUMP-single-cell

    Single cell analysis of the JUMP Cell Painting consortium pilot data (cpg0000)

    Jupyter Notebook BSD 3-Clause "New" or "Revised" License Updated Jan 14, 2025

  • set-presentations Public

    Forked from CU-DBMI/set-presentations

    A repository for presentations from the DBMI Software Engineering Team (SET)

    BSD 3-Clause "New" or "Revised" License Updated Jan 13, 2025

  • MOSS Public

    Forked from numfocus/MOSS

    Map of Open Source Science

    Python Apache License 2.0 Updated Dec 17, 2024

  • example Public

    BSD 3-Clause "New" or "Revised" License Updated Dec 16, 2024

  • CU-DBMI.github Public

    Forked from CU-DBMI/.github

    A special GitHub repository for setting the organization profile and default community health files.

    BSD 3-Clause "New" or "Revised" License Updated Dec 10, 2024

  • hetionet-analysis Public

    Forked from CU-DBMI/hetionet-analysis

    Various data analysis performed using Hetionet, a hetnet of biomedical knowledge.

    BSD 3-Clause "New" or "Revised" License Updated Nov 20, 2024

  • pre-commit-sbom-check Public

    Pre-commit hook for generating and checking a software bill of materials (SBOM) within a repository.

    Shell BSD 3-Clause "New" or "Revised" License Updated Nov 13, 2024

  • cckp-toolkit-workflow Public

    Forked from mc2-center/cckp-toolkit-workflow
    Shell Updated Nov 1, 2024

  • pandas Public

    Forked from pandas-dev/pandas

    Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

    Python BSD 3-Clause "New" or "Revised" License Updated Oct 29, 2024

  • demo-uv-dynamic-versioning Public

    Demonstrating Pythonic uv usage with dynamic versioning from setuptools-scm.

    Python BSD 3-Clause "New" or "Revised" License Updated Oct 26, 2024

  • demo-cellprofiler Public

    Forked from WayScience/demo-cellprofiler

    Demonstrating various CellProfiler development or implementations.

    Shell BSD 3-Clause "New" or "Revised" License Updated Oct 23, 2024

  • pycytominer-feedstock Public

    Forked from conda-forge/pycytominer-feedstock

    A conda-smithy repository for pycytominer.

    BSD 3-Clause "New" or "Revised" License Updated Oct 11, 2024

  • cytominer-database Public

    Forked from cytomining/cytominer-database

    [DEPRECATED] A package for storing morphological profiling data.

    Python Other Updated Oct 10, 2024

  • cytominer_database-feedstock Public

    Forked from conda-forge/cytominer_database-feedstock

    A conda-smithy repository for cytominer_database.

    BSD 3-Clause "New" or "Revised" License Updated Oct 9, 2024