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Achievements

Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: QuickdrawAchievement: StarstruckAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

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@UPHL-BioNGS

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  • nanoAMR Public

    TBD : Getting AMR genes from nanopore reads

    Python GNU General Public License v3.0 Updated Mar 7, 2025

  • docker-builds Public

    Forked from StaPH-B/docker-builds

    📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

    Dockerfile GNU General Public License v3.0 Updated Mar 6, 2025

  • GA_testing Public

    Just playing around with GA

    Python 1 GNU General Public License v3.0 Updated Mar 3, 2025

  • Phylophoenix Public

    Forked from NoForkJustCommit/Phylophoenix
    Python Apache License 2.0 Updated Feb 13, 2025

  • needles Public

    Nextflow workflow to run poppunk on a set of fasta files

    Nextflow MIT License Updated Jan 29, 2025

  • tulatyper Public

    Subtyping of Francisella tularensis subtypes

    Shell 6 1 GNU General Public License v3.0 Updated Jan 24, 2025

  • update_mash_dist Public

    mash works best when given a mash dist file with a bunch of references.

    1 GNU General Public License v3.0 Updated Jan 22, 2025

  • soundtracks Public

    A list of video game soundtracks that are great for work

    3 Updated Jan 16, 2025

  • modules Public

    Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow MIT License Updated Nov 14, 2024

  • MultiQC_TestData Public

    Forked from MultiQC/test-data

    Test data for MultiQC. See https://github.com/ewels/MultiQC

    HTML MIT License Updated Nov 14, 2024

  • nfpracticum Public

    Nextflow 1 MIT License Updated Aug 21, 2024

  • nfpracticum-demo Public

    Nextflow 1 MIT License Updated Aug 20, 2024

  • LaundryFlow Public

    Laundry with nextflow

    Nextflow 2 MIT License Updated Aug 1, 2024

  • erinyoung Public

    MIT License Updated Apr 3, 2024

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell MIT License Updated Feb 23, 2024

  • CirculoCov Public

    Estimates the coverage of nanopore or illumina reads on a draft assembly

    Python 7 GNU General Public License v3.0 Updated Feb 21, 2024

  • ACI Public

    Some NGS library preps use amplicons, and it can be difficult to determine the coverage and depth of each amplicon.

    coverage bioinformatics python3 depth amplicons samtools
    Python 3 MIT License Updated Jan 17, 2024

  • roundabout Public

    Finding regions of similarity between plasmids

    bioinformatics comparison synteny plasmid
    Nextflow 16 GNU General Public License v3.0 Updated Nov 2, 2022

  • Random Public

    Random things I don't want to forget

    MIT License Updated Dec 4, 2019