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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 647 375

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 327 84

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 315 82

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 255 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 148 93

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 119 21

Repositories

Showing 10 of 187 repositories
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    Python 91 MIT 8 108 (1 issue needs help) 4 Updated Mar 10, 2025
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    TypeScript 53 Apache-2.0 8 16 0 Updated Mar 10, 2025
  • nixpack Public

    nix+spack = nixpack (spanix?)

    Nix 46 MIT 4 1 5 Updated Mar 10, 2025
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    Python 2 2,385 0 12 Updated Mar 10, 2025
  • stan-playground Public

    Run Stan models in the browser

    TypeScript 42 Apache-2.0 1 11 1 Updated Mar 7, 2025
  • sciware Public

    Learning materials for scientific software development

    HTML 83 38 2 0 Updated Mar 6, 2025
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    Jupyter Notebook 8 MIT 0 20 3 Updated Mar 6, 2025
  • mountainsort5 Public

    MountainSort spike sorting algorithm, version 5

    Python 42 Apache-2.0 10 19 1 Updated Mar 6, 2025
  • simple_ans Public

    Simple ANS (Asymmetric Numeral Systems) implementation in Python/C++

    Python 3 Apache-2.0 4 0 0 Updated Mar 5, 2025
  • CryoLike Public
    Python 8 MIT 4 7 4 Updated Mar 4, 2025
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