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Concordia University
- Montreal, Canada
- https://www.concordia.ca/research/genome-foundry.html
Highlights
- Pro
Stars
The Web framework for perfectionists with deadlines.
Google Drive Python Wrapper: Automate file operations with a temporary access token. Simple, efficient, and ready for your Drive API projects.
An open-source application for biological image analysis
Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2
Python package for interpreting sequencing data of assembled DNA constructs (plasmids)
Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis
Quality control tools for nanopore sequencing data
Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
Plotting scripts for long read sequencing data
DEPRECATED - Teselagen's Open Source Vector/Plasmid Editor Component
qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
Cutadapt removes adapter sequences from sequencing reads
A quality control analysis tool for high throughput sequencing data
Webserver and command line tool for annotating engineered plasmids
Software for running top-level automation control scripts
Python toolbox for phenotype analysis of arrayed microbial colonies
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
Open source Front-End tool to simulate and visualize a microplate, an assay plate with multiple wells used as small test tubes in biology
⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
The reference implementation of the SBOL Visual standard
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
(Python3, PyQt5) GUI software to tile large images. Designed to image 96-well plates used in wet labs.
Django application and library for importing and exporting data with admin integration.
🌊 Smooth animation library for interpolating numbers