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  1. pypage pypage Public

    python implementation of the PAGE algorithm

    Python 15 3

  2. SwitchFinder SwitchFinder Public

    Python 15 1

  3. pyteiser pyteiser Public

    Python implementation of TEISER also capable of using SHAPE structural probing data

    Python 12 9

  4. Ribolog Ribolog Public

    A suite of regression-based tools for ribosome profiling data analysis

    Jupyter Notebook 8 1

  5. APAlog APAlog Public

    A tool for quantification of alternative poly A usage

    R 4 1

  6. cdsFM cdsFM Public

    cdsFM: Repository of Codon-based Foundation Models

    Python 4

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Showing 10 of 28 repositories
  • pyteiser Public

    Python implementation of TEISER also capable of using SHAPE structural probing data

    Python 12 MIT 9 4 1 Updated Jan 7, 2025
  • lorna-sh Public

    LoRNA-SH: A long-context RNA foundation model for predicting transcriptome architecture. Training pipeline and model weights.

    Python 3 MIT 3 1 1 Updated Oct 21, 2024
  • cdsFM Public

    cdsFM: Repository of Codon-based Foundation Models

    Python 4 MIT 0 6 0 Updated Oct 15, 2024
  • Pan-oncRNA Public
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 17, 2024
  • SwitchFinder Public
    Python 15 MIT 1 2 0 Updated Jul 16, 2024
  • goodarzilab.github.io Public

    Lab website

    HTML 0 1 0 0 Updated Jul 15, 2024
  • RBP_modules Public
    R 0 GPL-3.0 1 0 0 Updated Jun 6, 2024
  • pypage Public

    python implementation of the PAGE algorithm

    Python 15 MIT 3 17 0 Updated Apr 30, 2024
  • DMS-tutorial Public

    Assorted scripts for processing DMS-Seq data

    HTML 2 0 0 0 Updated Jan 31, 2024
  • Abe Public
    Jupyter Notebook 0 0 0 0 Updated Jan 4, 2024
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