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@greenelab

Greene Laboratory

Greene Laboratory at the University of Colorado Anschutz

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  1. scihub Public

    Source code and data analyses for the Sci-Hub Coverage Study

    Jupyter Notebook 296 39

  2. BioBombe Public

    BioBombe: Sequentially compressed gene expression features enhances biological signatures

    Jupyter Notebook 65 26

  3. lab-website-template Public template

    An easy-to-use, flexible website template for labs.

    HTML 406 334

  4. covid19-review Public

    A collaborative review of the emerging COVID-19 literature. Join the chat here:

    TeX 117 82

  5. deep-review Public

    A collaboratively written review paper on deep learning, genomics, and precision medicine

    HTML 1.3k 271

  6. tybalt Public

    Training and evaluating a variational autoencoder for pan-cancer gene expression data

    HTML 165 62

Repositories

Showing 10 of 171 repositories
  • scrumlord Public

    Continuous administration of the Greene Lab's electronic scrum

    Python 13 BSD-3-Clause 8 2 0 Updated Mar 7, 2025
  • CNN_deconvolution Public

    Ongoing project on deconvolution using higher-dimensional image representations of gene expression data.

    Python 0 BSD-3-Clause 1 0 1 Updated Mar 4, 2025
  • greenelab.com Public

    The website source code for greenelab.com

    HTML 1 BSD-3-Clause 24 2 0 Updated Feb 25, 2025
  • lab-website-template Public template

    An easy-to-use, flexible website template for labs.

    HTML 406 BSD-3-Clause 334 6 0 Updated Feb 25, 2025
  • pred_missing_celltypes Public

    Predicting missing cell-type proportions from deconvolution residual using NNLS.

    Jupyter Notebook 2 BSD-3-Clause 1 0 0 Updated Feb 8, 2025
  • deconvolution_adipocytes Public

    The following repository is a work in progress. the Aim is to deconvolve HGSOC samples with added adipocyte signal.

    R 0 BSD-3-Clause 2 0 1 Updated Feb 4, 2025
  • deconvolution_sc_sn_comparison Public

    The following repository is a work in progress. The Aim is to deconvolve samples with SC and SN, comparing performance.

    0 BSD-3-Clause 1 0 0 Updated Feb 3, 2025
  • backup Public

    Backup a GitHub user's or organization's repos and wikis

    TypeScript 0 0 0 0 Updated Jan 31, 2025
  • lab-website-template-docs Public

    GitBook documentation for Lab Website Template

    2 2 2 0 Updated Jan 27, 2025
  • ccc Public
    Jupyter Notebook 23 8 2 0 Updated Jan 17, 2025
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