The document GL-DPPD-7104-A.md holds an overview and example commands for how GeneLab processes Illumina amplicon sequencing datasets. See the Repository Links descriptions below for more information. Processed data output files and processing code are provided for each GLDS dataset in the GeneLab Data Systems (GLDS) repository.

Note: The exact processing commands and AmpIllumina version used for specific GLDS datasets can be found in the *_processing_info.tar file under "Study Files" for each respective GLDS dataset in the GLDS repository.

• Pipeline_GL-DPPD-7104_Versions

  • Contains the current and previous GeneLab Illumina amplicon sequencing data processing pipeline (AmpIllumina) versions documentation

• Workflow_Documentation

  • Contains instructions for installing and running the GeneLab AmpIllumina workflow

• GLDS_Processing_Scripts

  • Contains the exact processing commands and AmpIllumina version used for select GLDS datasets that have been released and are available in the GeneLab Data Systems (GLDS) repository

    Note: Exact processing commands and AmpIllumina version used for datasets not available in this sub-directory can be found in the *_processing_info.tar file under "Study Files" for each respective GLDS dataset in the GLDS repository.

Developed and maintained by:
Michael D. Lee (Mike.Lee@nasa.gov)