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7 stars written in C
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lumpy: a general probabilistic framework for structural variant discovery

C 322 119 Updated Jun 7, 2022

Windowed Adaptive Trimming for fastq files using quality

C 218 96 Updated May 8, 2017

A 3'-end adapter contaminant trimmer

C 92 39 Updated Jan 23, 2018

*UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for current versions of the source code.

C 32 21 Updated Nov 1, 2015

BFAST: the Blat-like Fast Accurate Search Tool

C 12 5 Updated Jan 29, 2022

in-memory k-mer counting

C 1 Updated Mar 11, 2011

A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and a Genomic Short-read Nucleotide Alignment Program

C 1 Updated Jan 12, 2012
7 stars written in C