Development of an open data training program for Mozilla Science Labs.

Interactive DataVis for PCBC expression data

Interact with CSV files as Python objects

Directory bookmarks for the shell

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Enhanced TeX modes for Emacs

Transparent Git Encryption

Tools for the NIH's Helix and Biowulf system

Emacs to Python interface

A Ruffus pipeline for Analysis of High-Throughput Sequencing data

A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and a Genomic Short-read Nucleotide Alignment Program

An R data package for the COSMIC database

A biplot based on ggplot2

NGS pipelines

Collection of emacs extensions specifically collected for python development, with workflow guidelines!

Tools for next-generation sequencing in use at the CCR/NCI

An implementation of the Grammar of Graphics in R

Collection of emacs extensions specifically collected for python development, with workflow guidelines!

Set of python and bash scripts to help automate submission of Sun Grid Engine jobs.

Useful bioinformatics code, primarily in Python and R

AREM -- Aligning Reads by Expectation-Maximization

in-memory k-mer counting

AREM -- Aligning Reads by Expectation-Maximization

A template utility for R projects that provides a skeletal project.

Python graph database framework for bioinformatics

My local copy of org-mode with emphasis on running R inside org-mode