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@luntergroup

Lunter group

Projects developed by the Lunter group (WIMM, Oxford and UMCG, Groningen)

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  1. octopus octopus Public

    Bayesian haplotype-based mutation calling

    C++ 307 37

  2. bamsplit bamsplit Public

    Split a BAM file by haplotype support

    Python 16 1

  3. polyploid polyploid Public

    Benchmarking variant calling in polyploids

    Jupyter Notebook 13 2

  4. smcsmc smcsmc Public

    Demographic inference from whole genomes

    C++ 11 4

  5. octopus-paper octopus-paper Public

    Paper for octopus variant caller

    Jupyter Notebook 4

  6. EquivariantNetworks EquivariantNetworks Public

    Python 4

Repositories

Showing 10 of 13 repositories
  • octopus Public

    Bayesian haplotype-based mutation calling

    C++ 307 MIT 37 48 2 Updated Mar 11, 2025
  • toplot Public

    Visualize latent variables obtained with latent Dirichlet methods (topic models)

    Python 0 MIT 0 0 0 Updated Jan 23, 2025
  • smcsmc Public

    Demographic inference from whole genomes

    C++ 11 GPL-3.0 4 2 1 Updated Oct 18, 2022
  • polyploid Public

    Benchmarking variant calling in polyploids

    Jupyter Notebook 13 MIT 2 0 0 Updated Nov 26, 2021
  • single-cell Public

    Benchmarking single-cell DNA variant calling

    Jupyter Notebook 2 MIT 0 0 0 Updated Aug 10, 2021
  • luntergroup.github.io Public
    0 0 0 0 Updated Jun 9, 2021
  • octopus-paper Public

    Paper for octopus variant caller

    Jupyter Notebook 4 0 0 0 Updated May 7, 2020
  • analysis Public Forked from popsim-consortium/analysis

    Analysis of inference methods on standard population models

    Python 0 MIT 13 0 0 Updated Aug 1, 2019
  • stdpopsim Public Forked from popsim-consortium/stdpopsim

    A library of standard simulation models for msprime

    Python 0 MIT 93 0 0 Updated Jul 31, 2019
  • EquivariantNetworks Public
    Python 4 0 0 0 Updated Sep 20, 2018
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