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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.3k 402

  2. TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    Python 131 14

  3. TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    Jupyter Notebook 178 19

  4. UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 415 58

  5. CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 326 28

  6. HEST Public

    HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

    Python 248 22

Repositories

Showing 10 of 32 repositories
  • TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    Python 131 14 9 3 Updated Mar 13, 2025
  • Patho-Bench Public

    Standardized benchmark for computational pathology foundation models.

    Python 55 5 2 1 Updated Mar 2, 2025
  • HEST Public

    HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

    Python 248 22 9 0 Updated Feb 27, 2025
  • MMP Public

    Multimodal prototyping for cancer survival prediction - ICML 2024

    Jupyter Notebook 74 8 0 0 Updated Feb 23, 2025
  • PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    Jupyter Notebook 119 14 0 0 Updated Feb 23, 2025
  • MADELEINE Public

    MADELEINE: multi-stain slide representation learning (ECCV'24)

    Python 47 5 2 1 Updated Feb 18, 2025
  • TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    Jupyter Notebook 178 19 1 1 Updated Feb 15, 2025
  • TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    Python 97 9 1 0 Updated Jan 24, 2025
  • CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 326 28 6 2 Updated Jan 15, 2025
  • UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 415 58 18 2 Updated Jan 15, 2025
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People

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