Introduction to data analysis for biophysics

Mini-Course on Data Analysis and Programming for our course Molecular Biophysics: Concepts & Methods

Python resources for various data analysis tasks

The following libraries are just some highlights of the Python ecosystem and why it is so popular for scientific computing and data analysis. It is by no means an exhaustive list, but should get you started for most projects.

Reading data, data wrangling, reshaping, etc.

• Pandas

Scientific computing, mathematics and numerics

• Numpy
• Scipy
• SymPy
• Fenics

Bioinformatics

• Biopython
• Bioservices

Plotting and data visualisation

• Matplotlib
• Seaborn
• Bokeh
• HoloViews

Model fitting, statistics and machine learning

• lmfit
• statsmodels
• scikit-learn

Image Processing

• scikit-image
• OpenCV
• Napari