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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 30 8

  2. NMDC_documentation Public

    Document workflows, schemas, and portal

    2 3

Repositories

Showing 10 of 81 repositories
  • nmdc_automation Public

    Prototype automation

    Python 2 2 63 4 Updated Mar 7, 2025
  • nmdc_mass_spectrometry_metadata_generation Public

    Mass spectrometry metadata generation

    Python 0 0 4 1 Updated Mar 7, 2025
  • metaT Public

    Metatranscriptomics workflow

    WDL 4 2 6 0 Updated Mar 7, 2025
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    HTML 7 5 112 (2 issues need help) 16 Updated Mar 7, 2025
  • ontology-loader Public
    Python 0 0 0 0 Updated Mar 6, 2025
  • metaMAGs Public

    Workflow for metagenome assembled genomes generation.

    Python 6 4 1 0 Updated Mar 6, 2025
  • nmdc-edge Public

    Web-based interface to the NMDC EDGE platform

    JavaScript 4 0 77 (1 issue needs help) 1 Updated Mar 6, 2025
  • nmdc-server Public

    Data portal client and server for NMDC.

    Python 9 0 149 16 Updated Mar 6, 2025
  • mg_annotation Public

    Metagenome Annotation Workflow

    WDL 4 7 3 1 Updated Mar 6, 2025
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 30 CC0-1.0 8 356 (1 issue needs help) 13 Updated Mar 6, 2025
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