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Record the CPU and memory activity of a process 📈
Retrieve author and publication information from Google Scholar in a friendly, Pythonic way without having to worry about CAPTCHAs!
A long read simulator based on badread idea
Searching DNA/RNA sequence databases with PCR and/or probe queries
Tools to analyze the differences and similarities between CRISPR arrays
A command line interface for the SNVPhyl Galaxy pipeline.
snipit: summarise snps relative to your reference sequence
⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
Virtual whiteboard for sketching hand-drawn like diagrams
Tool for fully-automated inference of species trees from raw genome assemblies
A toolbox for pangenome analysis and threshold evaluation.
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes)…
fast sequence evolution simulation for SARS-CoV-2 and similar
Phylogenetic maximum representation sampling: choosing most representative strains or taxa
A tool to find sequencing data and metadata from public databases.
Experiments with using BIGSI data structure for metagenomic and QC applications
Binwise Densified MinHash and Rapid Neighbor-joining Tree Construction for microbial genomes
SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a com…
pipeline for read mapping, snp calling and annotation for bacterial genomes
A post sequencing QC tool for Oxford Nanopore sequencers
Variant calling pipeline designed for Q20+ ONT long-reads
An easy-to-use program to assign O1 Vibrio cholerae genomes to canonical lineages using phylogenetic placement.
Common search engine for similarity based typing applications
Object detection webUI and model for dental xray analysis