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@neherlab

neherlab

Computational biology at the Biozentrum, Basel

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  1. covid19_scenarios covid19_scenarios Public

    Models of COVID-19 outbreak trajectories and hospital demand

    JavaScript 1.4k 350

  2. treetime treetime Public

    Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

    Jupyter Notebook 235 57

  3. pan-genome-analysis pan-genome-analysis Public

    Processing pipeline for pan-genome visulization and exploration

    Python 138 39

  4. SARS-CoV-2_variant-reports SARS-CoV-2_variant-reports Public

    Informal summaries of notable SARS-CoV-2 lineages

    108 12

  5. pangraph pangraph Public

    A bioinformatic toolkit to align genome assemblies into pangenome graphs

    C 99 7

  6. pan-genome-visualization pan-genome-visualization Public

    Forked from wdingx/pan-genome-visualization

    Visualization of the pan-genome output by panX

    JavaScript 63 14

Repositories

Showing 10 of 93 repositories
  • pangraph Public

    A bioinformatic toolkit to align genome assemblies into pangenome graphs

    C 99 MIT 7 9 3 Updated Mar 7, 2025
  • rsv_intrahost_2024 Public Forked from nextstrain/rsv

    Workflow for RSV analyses on Nextstrain.org

    Python 0 3 0 0 Updated Mar 6, 2025
  • SARS-CoV-2_variant-reports Public

    Informal summaries of notable SARS-CoV-2 lineages

    108 12 0 0 Updated Feb 27, 2025
  • coolify-test Public
    Smarty 0 0 0 1 Updated Feb 10, 2025
  • CCHFV Public
    Python 0 0 0 0 Updated Feb 7, 2025
  • Python 4 1 11 1 Updated Feb 4, 2025
  • HTML 0 1 0 0 Updated Jan 22, 2025
  • ncov-simple Public
    Python 2 1 9 1 Updated Jan 22, 2025
  • SARS2-mut-fitness-v2 Public

    Repository for computing fitness effects of nucletoide and amino acid mutations based on accurate neutral rates.

    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 9, 2025
  • TeX 0 0 0 0 Updated Jan 5, 2025

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