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@openworm

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.
README.md

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.

An overview of the core repositories in the project, along with the current status of automated testing, can be found here.

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  1. OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    Python 2.7k 217

  2. openworm.github.io Public

    OpenWorm main website

    HTML 25 35

  3. org.geppetto Public

    Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

    Python 212 50

  4. c302 Public

    The c302 framework for generating multiscale network models of C. elegans

    Python 116 22

  5. ChannelWorm2 Public

    Tools and curated datasets to build quantitative models of C. elegans ion channels

    Jupyter Notebook 11 2

Repositories

Showing 10 of 103 repositories
  • NicolettiEtAl2024_MN_IN Public Forked from ModelDBRepository/2017403

    C.elegans motor and interneurons (Nicoletti at al. 2024)

    Python 0 3 4 1 Updated Mar 12, 2025
  • NicolettiEtAl2019_NeuronModels Public Forked from ModelDBRepository/267187

    Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)

    Jupyter Notebook 1 2 1 0 Updated Mar 10, 2025
  • CE_locomotion Public Forked from edizquierdo/CE_locomotion

    Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer

    C++ 1 3 7 0 Updated Mar 9, 2025
  • simulate Public

    Links to online simulations of the worm

    HTML 0 0 0 0 Updated Mar 7, 2025
  • OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    Python 2,743 MIT 217 41 5 Updated Mar 6, 2025
  • ConnectomeToolbox Public

    Information on published connectomics data related to C. elegans

    Python 2 4 3 1 Updated Mar 6, 2025
  • c302 Public

    The c302 framework for generating multiscale network models of C. elegans

    Python 116 22 10 (1 issue needs help) 1 Updated Feb 24, 2025
  • org.geppetto.frontend Public

    Geppetto Java frontend bundle

    Java 29 25 2 4 Updated Feb 21, 2025
  • wormpose Public Forked from iteal/wormpose

    WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans

    Python 0 BSD-3-Clause 17 0 0 Updated Feb 21, 2025
  • org.geppetto.datasources Public
    Java 2 2 0 5 Updated Feb 20, 2025
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