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back-reference-qc Public
Detect outlier long-reads by using its Illumina counterpart.
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continuous-methylation Public
A Snakemake pipeline for methylation analysis using long-read sequencing (third generation).
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sfari-data-deposition Public
A one-off repo to share re-organization script.
Shell UpdatedJan 27, 2024 -
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bio-utils Public
A place where I keep scripts until I have enough to develop them into tools
Python UpdatedJan 5, 2024 -
methylink Public
CLI tool to link methylation tags between two files
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dss-test Public
A place to hold all the testing ideas for finding differential methylation regions
Python UpdatedAug 17, 2023 -
fix-sex-chrom Public
Ad-hoc solution to re-align sex chromosomes in male dual assemblies
Python UpdatedJul 28, 2023 -
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HiFiAdapterFilt Public
Forked from sheinasim-USDA/HiFiAdapterFiltRemove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
Shell GNU General Public License v3.0 UpdatedJul 27, 2023 -
tock-reserve Public
Forked from chinhtle/reserve-tflScript for making reservations on Tock
Python UpdatedJun 17, 2023 -
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Awesome-Bioinformatics Public
Forked from danielecook/Awesome-BioinformaticsA curated list of awesome Bioinformatics libraries and software.
UpdatedDec 30, 2022 -
hugo-theme-cactus Public
Forked from monkeyWzr/hugo-theme-cactusCactus theme for hugo
SCSS MIT License UpdatedDec 28, 2022 -
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anomaly Public
A pipeline to detect aberrant RNA events for clinical diagnostics in rare disease
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RareDisease_RNA_workflow Public
Forked from genomic-medicine-sweden/RareDisease_RNA_workflowNextflow UpdatedApr 29, 2022 -
tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedMar 22, 2022 -
test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedFeb 28, 2022 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedFeb 28, 2022 -
configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions
Nextflow MIT License UpdatedFeb 23, 2022 -
drop Public
Forked from gagneurlab/dropPipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
Python MIT License UpdatedJun 2, 2021 -
LDSA Public
A repository for Large Dataset Scientific Applications class at UU in the VT-2020 term. It's a class where we learn to utilize cloud-based applications and tools for scientific computing.
Jupyter Notebook UpdatedNov 26, 2020