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Starred repositories

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SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face 🤗.

14 1 Updated Mar 5, 2025

Create swimmer plots with ggplot2

R 26 4 Updated Dec 31, 2024

A repository as a discussion place for extending the ggplot2 R package

73 2 Updated Feb 26, 2025

Toolkit for large-scale whole-slide image processing.

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GNCnn (GlomeruloNephritis Classification by neural network): A QuPath extension for glomerulosclerosis and glomerulonephritis characterization based on deep learning

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Tidy output from regular expression matches

R 44 6 Updated Nov 9, 2024

Efficient data structures and IO for whole slide images analysis

Python 5 1 Updated Feb 10, 2025

Modular and scalable whole slide image analysis

Python 19 1 Updated Feb 10, 2025

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

R 6,615 262 Updated Dec 10, 2024

The Rendeiro lab manual

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Coincides with blogpost for using geojson and shapely

Python 31 8 Updated Nov 16, 2020

Code for the blogpost showing how to use Paquo to interact with, and classify, objects in QuPath with machine learning

Jupyter Notebook 10 4 Updated Sep 6, 2022

GrandQC tool for tissue detection and quality control in pathology

Python 30 10 Updated Mar 6, 2025

Biostatistics resources : reading list, RMarkdown notebooks, and more!

HTML 70 8 Updated Feb 2, 2025

Tidy Plots for Scientific Papers

R 471 17 Updated Mar 7, 2025

Psychometrics & Post Data Analysis (PsychoPDA) provides a suite of modules designed to enable researchers to perform post-data analyses in psychometric validation research. Currently, these functio…

R 1 3 Updated Jan 16, 2020

Bu çalışma ortamı Hesaplamalı Sosyal Bilimler YouTube kanalında paylaştığım içerikleri desteklemek için oluşturulmuştur.

1 1 Updated Jan 19, 2025
Python 81 8 Updated Jan 21, 2025

This project has been merged with vijPlots

R 1 2 Updated Oct 11, 2024

jamovi module to build statistical charts (histogram, boxplot, point, bar, line...) with many options along with Likert and multiple response barplots.

R 1 2 Updated Mar 1, 2025

R package arcdiagram

R 78 38 Updated Mar 27, 2022

Python tool for converting files and office documents to Markdown.

Python 39,644 1,844 Updated Mar 8, 2025

This repository demonstrates the application of Multi-Class Classification and Named Entity Recognition (NER) models on two datasets: PubMed 20k RCT for Multi-Class Classification and BC5CDR for NER.

Jupyter Notebook 2 Updated Dec 8, 2024

Power analysis in jamovi

R 2 3 Updated Jan 18, 2025

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TypeScript 32,969 3,131 Updated Mar 4, 2025

Every front-end GUI client for ChatGPT, Claude, and other LLMs

3,201 231 Updated Mar 2, 2025

Multimodal Whole Slide Foundation Model for Pathology

Jupyter Notebook 174 19 Updated Feb 14, 2025
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