Skip to content
@snakemake

Snakemake

Popular repositories Loading

  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.4k 584

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 218 190

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 157 29

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    58 12

  5. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    HTML 32 10

  6. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 29 24

Repositories

Showing 10 of 56 repositories
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 218 190 24 29 Updated Mar 14, 2025
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2,404 MIT 584 1,098 (1 issue needs help) 98 Updated Mar 13, 2025
  • snakemake-executor-plugin-googlebatch Public

    Snakemake executor plugin for Google Batch

    Python 3 MIT 6 11 4 Updated Mar 13, 2025
  • snakemake-executor-plugin-aws-batch Public

    A Snakemake executor plugin for AWS Batch

    Python 6 MIT 4 2 1 Updated Mar 13, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 29 MIT 24 29 5 Updated Mar 13, 2025
  • snakemake-tutorial-data Public

    Example data for the official Snakemake tutorial

    Dockerfile 7 19 0 1 Updated Mar 13, 2025
  • snakedeploy Public

    deploy a snakemake pipeline directly from version control (under development)

    Python 23 MPL-2.0 9 13 3 Updated Mar 13, 2025
  • snakemake-interface-software-deployment-plugins Public

    A stable interface for Snakemake software deployment plugins

    Python 0 MIT 0 0 1 Updated Mar 13, 2025
  • snakemake-storage-plugin-apd Public

    Snakemake storage plugin for use with the LHCb apd package

    Python 0 MIT 0 0 1 Updated Mar 13, 2025
  • snakemake-storage-plugin-xrootd Public

    A Snakemake storage plugin for handling input and output via XRootD

    Python 0 MIT 3 2 0 Updated Mar 12, 2025
View all repositories