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Sunbeam Labs

Code related to the Sunbeam whole-genome shotgun sequencing pipeline

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  1. sunbeam Public

    A robust, extensible metagenomics pipeline

    Python 168 42

  2. sbx_template Public template

    Template for Sunbeam extensions.

    Python 3 2

Repositories

Showing 10 of 31 repositories
  • sbx_shotgun_unifrac Public

    Sunbeam extension for assigning metagenomic reads to a full bacterial phylogeny

    Python 0 0 5 1 Updated Feb 25, 2025
  • sbx_sga Public

    A Sunbeam extension for Single Genome Assembly

    Python 0 2 3 1 Updated Feb 4, 2025
  • sbx_template Public template

    Template for Sunbeam extensions.

    Python 3 2 0 0 Updated Feb 4, 2025
  • sbx_virus_id Public
    Python 0 0 4 0 Updated Nov 20, 2024
  • sunbeam Public

    A robust, extensible metagenomics pipeline

    Python 168 42 16 3 Updated Aug 15, 2024
  • sbx_gene_clusters Public
    Python 2 5 1 1 Updated Aug 9, 2024
  • sbx_vsearch Public

    Sunbeam extension for Vsearch (https://github.com/torognes/vsearch)

    Python 0 GPL-3.0 1 0 0 Updated Aug 6, 2024
  • sbx_metaphlan4 Public

    Sunbeam extension for metaphlan 4 (compatible with sunbeam 4)

    Python 0 1 1 0 Updated Aug 5, 2024
  • sbx_kraken Public

    Extension for running kraken2 and kraken2-biom

    Python 0 1 1 0 Updated Jun 25, 2024
  • sbx_mapping Public

    Extension to map reads against a set of reference genomes

    Python 0 1 1 0 Updated Jun 25, 2024
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