ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of antibodies from their three-dimensional structure.
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Nov 8, 2024 - Jupyter Notebook
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normal-mode-analysis
Here are 9 public repositories matching this topic...
Predict allosteric pockets on proteins
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Mar 28, 2022 - Python
Elastic Network Contact Model (coarse-grained Normal Mode Analysis software)
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Jul 29, 2017 - C
Integrated Bioinformatics Project
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Dec 17, 2024 - Python
This repository contains different scripts used for the normal mode analysis of biomolecules with known crystal structures.
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May 19, 2021 - Jupyter Notebook
Normal mode analysis from meshes
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Jan 28, 2020 - Jupyter Notebook
Setup, run and analyse Adaptive MDeNM simulations on CHARMM
molecular-dynamics molecular-dynamics-simulation charmm enhanced-sampling enm molecular-modeling normal-modes normal-mode-analysis elastic-network-models
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Mar 7, 2025 - Shell
A tool to perform quick normal mode analysis on a PDB file using Tirion's model.
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Oct 11, 2022 - C
Setup and run aMDeNM simulations with Python
molecular-dynamics molecular-dynamics-simulation charmm namd enhanced-sampling enm molecular-modeling normal-modes normal-mode-analysis elastic-network-models
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Mar 7, 2025 - Python
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