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@datajoint

DataJoint

Open-source tools for computational data pipelines.

Welcome to DataJoint!

DataJoint for Python is an open-source framework for scientific data pipelines based on the relational data model. DataJoint prescribes a consistent method for organizing, populating, computing, and querying data.

In this GitHub Organization, you will find the source code for DataJoint, as well as tutorials and example pipelines.

Data Pipeline Example

pipeline

Yatsenko et al., bioRxiv 2021

Getting Started

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  1. datajoint-python Public

    Relational data pipelines for the science lab

    Python 175 86

  2. datajoint-tutorials Public

    Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

    Jupyter Notebook 11 136

  3. element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    Python 5 36

  4. element-calcium-imaging Public

    DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT

    Jupyter Notebook 10 47

Repositories

Showing 10 of 92 repositories
  • datajoint-python Public

    Relational data pipelines for the science lab

    Python 175 LGPL-2.1 86 37 1 Updated Apr 22, 2025
  • element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    Python 5 MIT 36 26 (2 issues need help) 0 Updated Apr 21, 2025
  • datajoint-feedstock Public Forked from conda-forge/datajoint-feedstock

    A conda-smithy repository for datajoint.

    0 BSD-3-Clause 6 1 0 Updated Apr 17, 2025
  • datajoint-docs Public

    Landing Page for DataJoint Documentation

    CSS 5 MIT 11 2 0 Updated Apr 17, 2025
  • suite2p Public Forked from MouseLand/suite2p

    cell detection in calcium imaging recordings

    Jupyter Notebook 0 GPL-3.0 252 0 0 Updated Apr 17, 2025
  • element-deeplabcut Public

    DataJoint Element for behavioral analysis with DeepLabCut

    Jupyter Notebook 13 MIT 39 8 (1 issue needs help) 0 Updated Apr 17, 2025
  • element-moseq Public

    DataJoint Element for Motion Sequencing with Keypoint-MoSeq

    Jupyter Notebook 3 MIT 4 0 0 Updated Apr 12, 2025
  • datajoint-specs Public

    DataJoint Specifications

    0 1 0 0 Updated Mar 25, 2025
  • CaImAn Public Forked from flatironinstitute/CaImAn

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 0 GPL-2.0 380 0 0 Updated Mar 17, 2025
  • nginx-docker Public
    Python 1 5 1 0 Updated Mar 1, 2025

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