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@libscran

libscran

C++ libraries for single-cell analysis
README.md

C++ libraries for single-cell analysis

This organization contains bits and pieces of C++ code for single-cell analysis. Most of this was originally taken from the scran R package, with some refactoring to enable re-use outside of R.

Developers can check out the scran-cli repository to see how the various libscran components fit together. For actual analyses, users are referred to the R, Python or Javascript bindings.

Popular repositories Loading

  1. umappp umappp Public

    C++ port of the UMAP algorithm

    C++ 50 15

  2. qdtsne qdtsne Public

    Quick-and-dirty t-SNE in C++

    C++ 10 3

  3. scran.chan scran.chan Public

    A slimmed down version of scran, based on the C++ library of the same name.

    R 10

  4. scranpy scranpy Public

    Single-cell data analysis, from C++ to Python

    Python 8

  5. libscran libscran Public archive

    scran, but in C++.

    C++ 7

  6. scrapper scrapper Public

    R bindings to C++ code for single-cell analysis

    R 5

Repositories

Showing 10 of 25 repositories
  • mumosa Public

    Multi-modal single-cell analyses

    C++ 1 MIT 0 0 0 Updated Apr 27, 2025
  • nenesub Public

    Subsampling based on nearest neighbors

    C++ 0 MIT 0 0 0 Updated Apr 27, 2025
  • umappp Public

    C++ port of the UMAP algorithm

    C++ 50 BSD-2-Clause 15 7 0 Updated Apr 27, 2025
  • qdtsne Public

    Quick-and-dirty t-SNE in C++

    C++ 10 MIT 3 1 0 Updated Apr 25, 2025
  • mnncorrect Public

    C++ implementation of the MNN correction algorithm

    C++ 4 MIT 0 1 0 Updated Apr 24, 2025
  • Rigraphlib Public

    Prebuilt igraph static library for Bioconductor packages

    R 1 0 0 0 Updated Apr 1, 2025
  • scrapper Public

    R bindings to C++ code for single-cell analysis

    R 5 0 2 0 Updated Mar 17, 2025
  • scranpy Public

    Single-cell data analysis, from C++ to Python

    Python 8 MIT 0 5 1 Updated Mar 17, 2025
  • scran_qc Public

    Compute simple quality control metrics for each cell

    C++ 0 MIT 0 1 0 Updated Feb 15, 2025
  • scran_pca Public

    Various flavors of principal components analysis

    C++ 0 MIT 0 0 0 Updated Feb 13, 2025
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