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@OpenGene

OpenGene - Open Source Genomics Toolbox

Open source tools for NGS data analysis

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  1. fastp Public

    An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

    C++ 2.1k 345

  2. MutScan Public

    Detect and visualize target mutations by scanning FastQ files directly

    C 153 38

  3. GeneFuse Public

    Gene fusion detection and visualization

    C 128 59

  4. gencore Public

    Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

    C++ 121 31

  5. repaq Public

    A fast lossless FASTQ compressor with ultra-high compression ratio

    C 139 20

  6. fastplong Public

    Ultra-fast preprocessing and quality control for long-read sequencing data

    C++ 158 7

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