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1. EscherConverter EscherConverter Public

   A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

   Java 16 10

2. ModelPolisher ModelPolisher Public

   ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.

   Java 23 8

3. SBMLme SBMLme Public

   Encoding ME models in SBML

   Java 7 2

4. refinegems refinegems Public

   refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

   Python 12 2

5. SPECIMEN SPECIMEN Public

   Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.

   Jupyter Notebook 5 2