Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
simplified cellranger for long-read data
Nextflow pipeline wrapper for executing Cell Ranger
scRNA-seq analysis 2022 workshop hosted by UMICH's CDS-SR
WDLized Cell Ranger GEX
A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger
G00x - Generalizable Germline-Targeting Clinical Trial Pipeline
A Snakemake workflow for analysing single cell data obtained from Cell ranger platform using Seurat package
A Haskell script that takes in a configuration YAML to create and launch Cell Ranger count and/or vdj runs via LSF bsub commands accordingly.
10x Cell Ranger Docker Image
Repository of the master project in Bioinformatics at Lund University
WDLized Cell Ranger Cell Plex
V(D)J T Cell and B Cell Analysis with cellranger vdj
Basic scRNA-seq analysis in Seurat using GBM data
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