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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 81 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 34 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 27 3

  6. BigStitcher-Spark BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    Java 25 13

Repositories

Showing 10 of 275 repositories
  • dis-utilities Public

    Utilities for Data and Information Services

    JavaScript 1 BSD-3-Clause 1 14 1 Updated Apr 3, 2025
  • colormipsearch Public

    Distributed Color Depth MIP Search

    Java 1 BSD-3-Clause 1 0 2 Updated Apr 3, 2025
  • SongExplorer Public

    deep learning for acoustic signals

    Python 24 BSD-3-Clause 6 5 1 Updated Apr 3, 2025
  • janelia-unity-toolkit Public

    Packages for the Unity game engine, emphasizing animal studies in VR.

    C# 17 11 5 2 Updated Apr 3, 2025
  • JavaScript 0 BSD-3-Clause 0 0 0 Updated Apr 3, 2025
  • G4_Display_Tools Public

    Collection of tools for the G4 LED arena displays.

    MATLAB 2 CC-BY-4.0 4 12 1 Updated Apr 3, 2025
  • neuronbridge-precompute Public

    Utilities for indexing and transferring of NeuronBridge-related files

    Python 0 BSD-3-Clause 0 0 0 Updated Apr 3, 2025
  • Nextflow 14 4 0 0 Updated Apr 2, 2025
  • jrc_common Public

    Library of common utility functions for Python

    Python 0 BSD-3-Clause 0 0 0 Updated Apr 2, 2025
  • neuronbridge Public

    EM/LM neuron search

    JavaScript 4 BSD-3-Clause 1 0 11 Updated Apr 2, 2025

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