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Achievement: Pull SharkAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

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Stars

10 stars written in Java
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broadinstitute / picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Java 1,002 373 Updated Apr 3, 2025

lindenb / jvarkit

Java utilities for Bioinformatics

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BioInfoTools / BBMap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

Java 224 111 Updated Feb 11, 2021

dariober / ASCIIGenome

Text Only Genome Viewer!

Java 213 15 Updated Apr 3, 2025

ctSkennerton / minced

Mining CRISPRs in Environmental Datasets

Java 107 18 Updated Feb 10, 2023

schatzlab / crossstitch

Code for phasing SVs with SNPs

Java 52 3 Updated Mar 27, 2020

s-andrews / BamQC

Mapped QC analysis program

Java 43 8 Updated May 16, 2018

endixk / ezaai

EzAAI - High Throughput Prokaryotic AAI Calculator

Java 38 4 Updated Oct 14, 2024

koadman / mauve

A genome alignment and visualization system

Java 27 7 Updated Nov 15, 2020

tgvaughan / bacter

Bacterial phylogenetics in BEAST 2.

Java 17 6 Updated Mar 30, 2023
10 stars written in Java