Evaluating Nanopore-based bacterial variant calling

A SIMD-accelerated library to compute random minimizers

Nanopore demultiplexing, QC and alignment pipeline

Follow up to Grace Blackwell's 661k dataset, for 2023

An R package designed for drawing gene arrow maps

Whole Genome Alignment Tools

A fast whole-genome aligner based on de Bruijn graphs

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

customizable pipeline to identify viral sequences from (meta)genomic data

Performant, batteries-included completion plugin for Neovim

A local-haplotagging-based small and structural variant caller

TransAnnot - a fast transcriptome annotation pipeline

SpacePHARER CRISPR Spacer Phage-Host pAiRs findER

Discovery of conserved gene clusters in multiple genomes

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins

bacQC is a bioinformatics analysis pipeline for assessing the quality of bacterial isolate sequence data

bacQC-ONT is a bioinformatics pipeline for the assessment of Oxford Nanopore sequence data

Mulled - Automatized Containerized Software Repository

Supporting data for the publication "Investigating the performance of Oxford Nanopore long-read sequencing with respect to Illumina microarrays and short-read sequencing"

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

Phage Annotation using Protein Structures

The undo history visualizer for VIM

Efficiency plugin designed to optimize code actions in Neovim

Check syntax in Vim/Neovim asynchronously and fix files, with Language Server Protocol (LSP) support

Fully customizable previewer for LSP code actions.

Reorients assembled microbial sequences