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This repository contains the scripts for reproducing the results presented in Costa AC, Ahamed T, Jordan D, Stephens GJ (2023) "A Markovian dynamics for C. elegans behavior across scales" https://a…
Trajectory Variational Autoencoder baseline for Multi-Agent Behavior challenge 2022
SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers
A Python toolbox for analysing body movements across space and time
Enhancing {ggplot2} plots with statistical analysis 📊📣
A deep learning framework for multi-animal pose tracking.
Toolkit for trajectory data processing, network construction and analysis
Refine high-quality datasets and visual AI models
A collection of unexpected challenges and learnings with nextflow and nf-core.
R package phase that compiles functions for analysis of Drosophila activity, sleep and entrainment (data collected using DAM), and for building the phaseR-GUI
Parallel implementation of PCA on Nvidia CUDA
A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.
Benchmarking communication of numpy arrays between Python processes
NO LONGER THE OFFICIAL REPO (GO TO https://gitlab.com/polavieja_lab/trajectorytools/) A library with some utils to study and plot 2D trajectories developed by members of "de Polavieja lab" (Champal…
Converts MySQL dump to SQLite3 compatible dump
Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)
tracking system device for small animals
FicTrac: A webcam-based method for tracking spherical motion and generating fictive animal paths.
Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filte…
Python scraper for Language Pods such as Japanesepod101.com 👹 🗾 🍣 Compatible with Japanese, Chinese, French, German, Italian, Korean, Portuguese, Russian, Spanish and many more! ✨
Self-Supervised Noise Embeddings (Self-SNE)
This is the development home of the workflow management system Snakemake. For general information, see