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23 stars written in Java
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RStudio is an integrated development environment (IDE) for R

Java 4,771 1,113 Updated Apr 4, 2025

Building Open-Ended Embodied Agents with Internet-Scale Knowledge

Java 1,925 173 Updated Mar 18, 2024

Genetic circuit design automation

Java 828 139 Updated Sep 19, 2022

Build the best - destroy the rest!

Java 755 289 Updated Mar 30, 2025

Generative Agents for video games. Based on Generative Agents: Interactive Simulacra of Human Behavior

Java 679 54 Updated Oct 11, 2023

Science Parse parses scientific papers (in PDF form) and returns them in structured form.

Java 653 89 Updated May 26, 2024

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Pub…

Java 393 248 Updated Mar 14, 2025

JIDT: Java Information Dynamics Toolkit for studying information-theoretic measures of computation in complex systems

Java 267 75 Updated Apr 1, 2025

Maximum entropy modelling of species geographic distributions.

Java 231 91 Updated Jan 11, 2024

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities,…

Java 210 102 Updated Apr 3, 2025

A plugin framework and application container with built-in extensibility mechanism 🔌

Java 89 52 Updated Mar 25, 2025

Tool for precise, interactive, fast and scalable FISH spot detection

Java 49 14 Updated Feb 4, 2025

Transcranial focused ultrasound visualization system

Java 39 7 Updated Apr 26, 2022

HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs

Java 37 11 Updated Aug 19, 2024

Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

Java 25 22 Updated Apr 5, 2025

The ImageJ native launcher

Java 22 18 Updated Oct 11, 2024

The Platform for Online Group Studies (POGS) is a tool to study collective learning.

Java 19 13 Updated Apr 16, 2024

The automatic updater for ImageJ

Java 12 15 Updated Apr 4, 2025

a tool to study online software development communities

Java 12 5 Updated Apr 3, 2024

Fiji plugins for pQCT image analysis.

Java 3 5 Updated Jun 14, 2022

Beta test of Embedded helper Software, a Brandeis University SPARK Startup

Java 1 3 Updated Feb 19, 2021

A Java library for the Synthetic Biology Open Language version 3

Java 1 1 Updated Apr 9, 2024
23 stars written in Java