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@mpinb

Max Planck Institute for Neurobiology of Behavior - caesar

README.md

Welcome to the MPINB GitHub page

For employee access, please refer to the corresponding intranet page.

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  1. msemalign msemalign Public

    serial section multibeam scanning electron microscopy volume alignment

    Python 5 1

  2. gauss-em gauss-em Public

    Example that demonstrates computationally solving the order of unordered serial slices

    Jupyter Notebook 1

  3. swarm-scripts swarm-scripts Public

    scripts for a basic method of scaling on a SLURM HPC cluster

    Python 1

  4. ffn ffn Public

    Forked from google/ffn

    Flood-Filling Networks for instance segmentation in 3d volumes.

    Python

  5. rcc-xcorr rcc-xcorr Public

    A Python library to compute normalized 2D cross-correlation of images using GPU and multiprocessing.

    Jupyter Notebook

  6. Multiview Multiview Public

    Forked from PaulStahr/Multiview

    A program which calculates different optical measures in Opengl.

    C++

Repositories

Showing 10 of 41 repositories
  • submitit Public Forked from erjel/submitit

    Python 3.8+ toolbox for submitting jobs to Slurm

    Python 0 MIT 135 0 0 Updated Apr 1, 2025
  • sleap Public Forked from talmolab/sleap

    A deep learning framework for multi-animal pose tracking.

    Python 0 106 0 0 Updated Apr 1, 2025
  • isf-pandas-msgpack Public Forked from abast/pandas-msgpack

    In-Silico-Framework Pandas Msgpack

    Python 0 21 0 0 Updated Mar 26, 2025
  • multi_gpu_training Public Forked from PrincetonUniversity/multi_gpu_training

    jupyter notebooks discussing multi GPU training and performance profiling

    Python 0 MIT 46 0 0 Updated Mar 6, 2025
  • braid-opto-arena Public
    Jupyter Notebook 0 0 0 0 Updated Feb 27, 2025
  • Kaleido Public Forked from plotly/Kaleido

    Fast static image export for web-based visualization libraries with zero dependencies

    HTML 0 MIT 45 0 0 Updated Feb 21, 2025
  • alphafold Public Forked from google-deepmind/alphafold

    Open source code for AlphaFold 2.

    Python 0 Apache-2.0 2,391 0 0 Updated Jan 29, 2025
  • msemalign Public

    serial section multibeam scanning electron microscopy volume alignment

    Python 5 GPL-3.0 1 0 0 Updated Dec 3, 2024
  • Augmentor Public Forked from seung-lab/Augmentor

    Data augmentation for training 3D convolutional nets

    Jupyter Notebook 0 GPL-3.0 7 0 0 Updated Oct 25, 2024
  • swipe-labeler Public Forked from spaceml-org/Swipe-Labeler

    Swipe Labeler is a Graphical User Interface based tool that allows rapid labeling of image data.

    Jupyter Notebook 0 6 0 0 Updated Oct 23, 2024
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