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    276 repositories

    • BigStitcher-Spark

      Public
      Running compute-intense parts of BigStitcher distributed
      Java
      •
      BSD 2-Clause "Simplified" License
      •13•25•15•1•Updated Apr 6, 2025Apr 6, 2025

    • nf-bigstitcher

      Public
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 5, 2025Apr 5, 2025

    • dvid-point-cloud

      Public
      Library for creating point clouds for sparse volumes within DVID
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Apr 5, 2025Apr 5, 2025

    • containers

      Public
      Containers for workflow plugins
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Apr 4, 2025Apr 4, 2025

    • WaveSurfer

      Public
      A Matlab application for electrophysiology data analysis
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •10•21•60•0•Updated Apr 4, 2025Apr 4, 2025

    • fileglancer

      Public
      Browse, share, and publish data in the Janelia file system
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 4, 2025Apr 4, 2025

    • G4_Display_Tools

      Public
      Collection of tools for the G4 LED arena displays.
      MATLAB
      •
      Creative Commons Attribution 4.0 International
      •4•2•12•1•Updated Apr 4, 2025Apr 4, 2025

    • dis-utilities

      Public
      Utilities for Data and Information Services
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•14•1•Updated Apr 4, 2025Apr 4, 2025

    • jrc_common

      Public
      Library of common utility functions for Python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 4, 2025Apr 4, 2025

    • easifish

      Public
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Apr 4, 2025Apr 4, 2025

    • janelia-unity-toolkit

      Public
      Packages for the Unity game engine, emphasizing animal studies in VR.
      C#
      •
      Other
      •11•17•5•2•Updated Apr 4, 2025Apr 4, 2025

    • neuronbridge-precompute

      Public
      Utilities for indexing and transferring of NeuronBridge-related files
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 4, 2025Apr 4, 2025

    • bigstream

      Public
      Tools for distributed alignment of massive images
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •21•81•12•1•Updated Apr 4, 2025Apr 4, 2025

    • videoAnnotation_backend

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 3, 2025Apr 3, 2025

    • videoAnnotation

      Public
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 3, 2025Apr 3, 2025

    • neuronbridge

      Public
      EM/LM neuron search
      neuroscienceneuroimagingneuronsdrosophilajaneliaaws
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•11•Updated Apr 3, 2025Apr 3, 2025

    • SongExplorer

      Public
      deep learning for acoustic signals
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•24•5•1•Updated Apr 3, 2025Apr 3, 2025

    • colormipsearch

      Public
      Distributed Color Depth MIP Search
      neurosciencesearch-algorithmneuron
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•2•Updated Apr 3, 2025Apr 3, 2025

    • nextflow-spark

      Public
      Nextflow
      •4•14•0•0•Updated Apr 2, 2025Apr 2, 2025

    • jacs-cm

      Public
      JACS Configuration Management
      janeliajanelia-workstationmouselightdockerdevopsdocker-swarmswarm
      XSLT
      •
      Other
      •3•8•17•3•Updated Apr 2, 2025Apr 2, 2025

    • diff-rsync-o

      Public
      Linux scripts for transferring data from rig computers
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Apr 2, 2025Apr 2, 2025

    • jacs-compute

      Public
      JAnelia Compute Services (JACS)
      distributed-computingneuroimagingcluster-computing
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Apr 1, 2025Apr 1, 2025

    • jacs-model

      Public
      JACS Domain Model and DAOs
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Apr 1, 2025Apr 1, 2025

    • hortacloud-website

      Public
      Documentation website for HortaCloud
      neurosciencejaneliahortacloud
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•4•Updated Apr 1, 2025Apr 1, 2025

    • fileglancer-central

      Public
      Central metadata server for Fileglancer deployments
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • EM_recon_pipeline

      Public
      Pipeline scripts and tools for reconstructing Electron Microscopy volumes.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•3•0•3•Updated Mar 31, 2025Mar 31, 2025

    • jacs-storage

      Public
      JADE file storage services
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Mar 29, 2025Mar 29, 2025

    • tmt

      Public
      A toolbox of Matlab functions useful for data analysis, especially of electrophysiology data.
      MATLAB
      •1•3•0•0•Updated Mar 28, 2025Mar 28, 2025

    • repp

      Public
      Repository-based plasmid design
      Go
      •
      GNU General Public License v2.0
      •4•0•0•0•Updated Mar 28, 2025Mar 28, 2025

    • hortacloud

      Public
      HortaCloud - 3D annotation platform for large microscopy data
      awsneurosciencescientific-computingneuronsannotation-tooljanelia
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•10•47•0•Updated Mar 28, 2025Mar 28, 2025