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    21 repositories

    • ideas-toolbox-caiman

      Public
      Set of tools based on the open-source package CaImAn for the Inscopix IDEAS platform
      Python
      •0•0•0•1•Updated Apr 11, 2025Apr 11, 2025

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
      Python
      •
      GNU General Public License v2.0
      •377•2•0•0•Updated Apr 4, 2025Apr 4, 2025

    • pyisx

      Public
      Python API for interacting with Inscopix data.
      apicalcium-imaginginscopixisxd
      Python
      •
      Other
      •2•8•10•0•Updated Jan 7, 2025Jan 7, 2025

    • idas-real-time-stream

      Public
      Inscopix Data Acquisiton System - Real-time Stream
      Python
      •
      Other
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • ideas-toolbox-public-template

      Public
      Makefile
      •0•1•0•0•Updated Oct 11, 2024Oct 11, 2024

    • ideas-toolbox-suite2p

      Public
      Set of Suite2P based tools for IDEAS
      Python
      •
      Other
      •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

    • ideas-toolbox-deeplabcut

      Public
      Set of DeepLabCut based tools for IDEAS
      Python
      •
      Other
      •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • ideas-public-python-utils

      Public
      Core utils and functions for IDEAS open source containers
      Python
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • isxcore

      Public
      Core functionality of the isx C++ API
      C++
      •
      Other
      •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • isxSuite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •251•0•0•0•Updated Aug 28, 2024Aug 28, 2024

    • HeatMaps

      Public
      Grid of heatmaps with time-sensitive correlations
      Python
      •1•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • ideas-example-tool

      Public
      Simple python functions for eventual encapsulation in IDEAS
      Python
      •0•1•0•0•Updated Jan 3, 2024Jan 3, 2024

    • inscopix-cnmfe

      Public
      Algorithm for automated source extraction from 1P data
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •8•21•4•0•Updated Jun 16, 2023Jun 16, 2023

    • mpl_moviemaker

      Public
      Wrapper for the Matplotlib Animation class that facilitates movie generation
      Jupyter Notebook
      •0•1•1•0•Updated Oct 12, 2022Oct 12, 2022

    • isx-video-labeler

      Public
      Simple Python approach to manually labeling video frames to generate training data for supervised machine learning models.
      Jupyter Notebook
      •1•0•0•0•Updated Feb 11, 2022Feb 11, 2022

    • janus-webrtc-gateway-docker

      Public
      Perfect Docker Image for Media Streaming Expert User ( https://github.com/meetecho/janus-gateway )
      Dockerfile
      •201•0•0•0•Updated Oct 31, 2020Oct 31, 2020

    • astellas

      Public
      Analysis pipeline, notebooks, and results for Astellas collaboration 2019-2021.
      Jupyter Notebook
      •0•0•0•0•Updated Aug 31, 2020Aug 31, 2020

    • isx-cnmfe-wrapper

      Public
      Code to call CNMFe through CaImAn or MATLAB
      MATLAB
      •
      GNU General Public License v2.0
      •0•2•0•0•Updated May 26, 2020May 26, 2020

    • CNMF_E

      Public
      Constrained Nonnegative Matrix Factorization for microEndoscopic data
      MATLAB
      •
      GNU General Public License v3.0
      •74•2•0•0•Updated Oct 3, 2018Oct 3, 2018

    • com_CC

      Public
      Other
      •0•0•0•0•Updated Sep 14, 2018Sep 14, 2018

    • ca_source_extraction

      Public
      Complete Matlab pipeline for large scale calcium imaging data analysis
      MATLAB
      •
      GNU General Public License v2.0
      •148•0•0•0•Updated May 5, 2017May 5, 2017