Python Package for the downstream analysis of mass-spectrometry-based proteomics data

Computational framework for dataset integration

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

Bayesian Optimization and Design of Experiments

Track and lineage visualization with btrack and Napari 🌲

Bayesian multi-object tracking

Python package for processing image-based profiling data

Documentation for installing and using of DeepProfiler

Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.

Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.

UMM-Discovery is a fully unsupervised deep learning method to cluster cellular images with similar phenotypes together, solely based on the intensity values.

Matlab code used to detect, analyse, digitally straighten and correlate polymer/filament/fibril features in image files.

A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

Code accompanying batch effects processing workflow for "omic" data, mainly targeted for proteomics

🔬 Path to a free self-taught education in Bioinformatics!

TxAgent: An AI Agent for Therapeutic Reasoning Across a Universe of Tools

PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.