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pysolo_db.py
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#!/usr/bin/env python
import os
from pysolo_path import panelPath, imgPath
os.sys.path.append(panelPath)
from default_panels import CustTableGrid, gridlib, SavePreferenceFile, FileDrop
from pysolo_lib import *
import wx.lib.calendar
class DAMlist(CustTableGrid):
def __init__(self, *args, **kwargs):
CustTableGrid.__init__(self, *args, **kwargs)
self.Bind(wx.EVT_KEY_DOWN, self._OnKeyDown)
def _OnKeyDown(self, event):
"""
used for autocompletion
"""
if event.GetKeyCode() == 9: #if we press the TAB KEY
row = self.GetGridCursorRow()
col = self.GetGridCursorCol()
value = self.autoComplete(row, col)
self.SetCellValue(row, col, value)
event.Skip()
def autoComplete(self, row, col):
"""
auto complete
"""
output = ''
ct = ['','','mon1','ch1','mon2','ch2','','','mm1','dd1','mm2', 'dd2', 'yyyy','','']
if ct[col] == 'ch1': #complete channel one
output = 1
if ct[col] == 'ch2': #complete channel two
output = 32
if ct[col] == 'yyyy': #complete year
output = datetime.date.today().year
if ct[col] == 'mm1': #complete month one
output = str(datetime.date.today().month)
if ct[col] == 'dd1': #complete day one
output = str(datetime.date.today().day)
if ct[col] in ['mon2', 'mm2', 'dd2']: #auto complete end values
output = self.table.data[row][col-2]
return str(output)
def rowNumber(self):
"""
Return the number of rows that compose the table
"""
return len(self.table.data)
def AddTagToChecked(self, tag_name):
"""
Add the specified tag to the cheked rows
"""
for row in range( self.rowNumber() ):
if self.table.data[row][1] and not self.table.data[row][14]: #if cheched and visible
all_tags = set(self.table.data[row][13].split(';'))
all_tags.discard('')
all_tags.add(tag_name)
self.table.data[row][13] = list2str(all_tags, separator=';')
def RemoveTagFromChecked(self, tag_name):
"""
Remove the specified tag from all checked rows
"""
for row in range( self.rowNumber() ):
if self.table.data[row][1] and not self.table.data[row][14]: #if cheched and visible
all_tags = self.table.data[row][13].split(';')
all_tags.remove(tag_name)
self.table.data[row][13] = list2str(all_tags, ';')
def ShowAll(self):
"""
Show (unhide) all the rows
"""
for row in range( self.rowNumber() ):
if len(self.table.data[row]) == 15:
self.table.data[row][14] = 0
else:
self.table.data[row].append(0)
def ShowTagged(self, tag_name):
"""
Show only the rows that have a specified tag_name
"""
found_some = False
self.ShowAll()
if tag_name != 'All': #if we did not choose "All"
for row in range( self.rowNumber() ):
all_tags = self.table.data[row][13].split(';')
if not tag_name in all_tags:
self.table.data[row][14] = 1 #hide
found_some = True
return found_some
def GetCheckedRows(self):
"""
return a list containing the numbers corresponding to the checked rows
"""
checked = []
for row in self.table.data:
if row[1]: checked.append(row[0]) # if the line is checked
return checked
def AllChecked(self):
"""
are all the rows checked?
"""
AllChecked = True
for row in self.table.data:
if not row[14]: AllChecked = AllChecked * row[1]
return AllChecked
def CheckAll(self, value):
"""
Check / Uncheck all rows
"""
for row in range( self.rowNumber() ):
if not self.table.data[row][14]: self.table.data[row][1] = value
def search(self, searchMask):
"""
search in the table and show only the results that satisfy the query
"""
for item in searchMask[-1]:
if item != '' and item != '0' and item != '*':
if type(item) == str and item[0] == '*' and item[-1] == '*':
item = item[1:-1]
for row in range( self.rowNumber() ):
if item not in self.table.data[row][i]: self.table.data[row][14] = 1
else:
for row in range( self.rowNumber() ):
if self.table.data[row][i] != item : self.table.data[row][14] = 1
i += 1
def ControRowsSyntax(self):
"""
Goes through damlist and checks that all necessary values are filled in the checked rows
"""
allFilled = True
if ( len(self.table.data) == 0 ) or (list(zip(*self.table.data)[1]).count(True) == 0 ): allFilled = False #no row available or no row selected
for row in self.table.data:
if row[1]:
for v in row[2:7]+row[8:13]:
if v == '': allFilled = False #at least one row has value missing
return allFilled
def DeleteRows(self, tobeDel):
"""
Delete the rows specified in the tobeDel list
"""
dl = self.table.data; self.SetData([])
tobeDel.sort(); tobeDel.reverse()
[dl.pop(int(x)-1) for x in tobeDel]
for row in range(len(dl)): dl[row][0] = (row+1)
self.SetData(dl)
def AddRow(self, tag_name):
"""
Add a new empty row. Will have the specified tag_name
"""
#Create the new row and add it to the table
new_id = '%s' % ( len(self.table.data)+1 )
new_row = [new_id, False] + [''] * 11 + [tag_name] + [False]
self.table.AddRow([new_row])
def ChangeRow(self, row, content):
"""
Change the content of specified row
"""
self.table.data[row] = content
def Empty(self):
"""
Clear empty the all table
"""
#self.table.data = []
self.SetData([])
def hasValues(self):
"""
is the table empty or has some values?
"""
return (len(self.table.data) > 0)
def UpdateChecked(self, content):
"""
replace the content of all checked and visible rows
"""
somethingChanged = False
for row in range( self.rowNumber() ):
if self.table.data[row][1] and not self.table.data[row][14]:
for col in range (2,14):
if content[col]:
self.table.data[row][col] = content[col]
somethingChanged = True
return somethingChanged
def Update(self):
"""
refresh and update the value of the table
"""
self.SetData (self.table.data)
self.doHide()
def renumber(self):
"""
Renumber all the list properly
"""
for row in range(self.rowNumber()):
self.table.data[row][0] = row+1
def doHide(self):
"""
Hide those rows where visible bool value is set to false
"""
for row in range( self.rowNumber() ):
if self.table.data[row][14]==1: self.SetRowSize(row,0)
self.ForceRefresh()
class pySolo_DBFrame(wx.Frame):
"""
This is the main frame class for the DB
"""
def __init__(self, parent, id, title, siblingMode = False):
wx.Frame.__init__(self, parent, id, title, (-1,-1), size=(1024,768), style = wx.DEFAULT_FRAME_STYLE )
self.parent = parent
self.SiblingMode = siblingMode
self.GetOptionValues()
self.searchResult= []
self.MakeMenuBar()
self.MakeTheNoteBook()
self.updateListing()
self.Bind(wx.EVT_CLOSE, self.OnClose)
#Support for opening file on Drag and Drop
allowedExtensions = dict()
allowedExtensions['dal'] = self.OnFileOpen
self.DropArea = FileDrop(self, allowedExtensions)
self.SetDropTarget(self.DropArea)
def __SetBrother__(self, brotherFrame):
self.BrotherFrame = brotherFrame
self.SiblingMode = True
def MakeTheNoteBook(self):
"""
Makes the Notebook
"""
self.nb = wx.Notebook(self)
self.nb.AddPage(self.PageListing(self.nb), 'Listing')
self.nb.AddPage(self.PageBrowser(self.nb), 'Browser')
self.Bind(wx.EVT_NOTEBOOK_PAGE_CHANGED, self.OnPageChanged, self.nb)
def GetOptionValues(self):
"""
TODO!
"""
self.title = 'PySolo v%s - Database' % pySoloVersion
self.filename = ''
self.INPUT_BOX = []
self.BrowsingData = []
self.chkAll = False
self.lastSelected = -1
self.fileIsModfied = False
self.DAM = []
self.DAMpath = userConfig['DAMinput'][:]
self.dirname = userConfig['DAMoutput'][:]
def TagPanel(self, parent):
"""
This function creates the Tag Panel to be add to the notebook.
Returns a Panel instance
"""
tagpanel = wx.Panel(parent)
self.TagList = []
self.TagListBox = wx.ListBox(tagpanel, wx.ID_ANY, (0,0), (-1,-1), self.TagList)
self.TagListBox.Bind (wx.EVT_LISTBOX, self.OnSelectTag)
self.newTagBox = wx.TextCtrl(tagpanel, wx.ID_ANY)
imageNewTag = wx.Image(imgPath+'/add_tag.png', wx.BITMAP_TYPE_ANY).ConvertToBitmap()
newTagBtn = wx.BitmapButton(tagpanel, wx.ID_ANY, bitmap=imageNewTag, size = (imageNewTag.GetWidth()*1.3, imageNewTag.GetHeight()*1.3))
newTagBtn.SetToolTipString('Add the tag typed in the lower text box to all the visible currently checked rows')
newTagBtn.Bind(wx.EVT_BUTTON, self.OnNewTag)
imageRemTag = wx.Image(imgPath+'/rem_tag.png', wx.BITMAP_TYPE_ANY).ConvertToBitmap()
delTagBtn = wx.BitmapButton(tagpanel, wx.ID_ANY, bitmap=imageRemTag, size = (imageRemTag.GetWidth()*1.3, imageRemTag.GetHeight()*1.3))
delTagBtn.Bind(wx.EVT_BUTTON, self.OnRemoveTag)
delTagBtn.SetToolTipString('Remove the selected tag from all the currently visible checked rows')
tagBtnSizer = wx.BoxSizer(wx.HORIZONTAL)
tagBtnSizer.Add(newTagBtn, 0 ,wx.LEFT | wx.RIGHT, 1)
tagBtnSizer.Add(delTagBtn, 0 ,wx.LEFT | wx.RIGHT, 1)
tagsizer = wx.BoxSizer(wx.VERTICAL)
tagsizer.Add( self.TagListBox, 1, wx.EXPAND | wx.GROW)
tagsizer.Add( self.newTagBox, 0, wx.EXPAND | wx.GROW)
tagsizer.Add( tagBtnSizer , 0, wx.ALL, 5)
tagpanel.SetSizer(tagsizer)
return tagpanel
def PageListing(self, nb):
"""
This function creates the Listing Panel to be add to the notebook.
Returns a Panel instance
"""
minpane, initpos = 130,130
sp = wx.SplitterWindow(nb)
sp.SplitVertically(self.TagPanel(sp), self.TableListing(sp), initpos)
sp.SetMinimumPaneSize(minpane)
return sp
def resetTablesSize(self):
"""
Set size for columns
"""
cols_size = (30,22,38,38,38,38,100,100,38,38,38,38,42,0,0)
self.DAMlist.SetColsSize(cols_size)
self.DAMlist.SetRowLabelAlignment(0,0)
self.DAMlist.SetRowLabelSize(3)
self.searchSheet.SetColsSize(cols_size)
self.searchSheet.SetRowLabelAlignment(0,0)
self.searchSheet.SetRowLabelSize(3)
def TableListing(self, parent):
"""
This function creates the Listing Panel to be add to the notebook.
Returns a Panel instance
"""
tblpnl = wx.Panel(parent, wx.ID_ANY)
colLabels = ['ID','','SM','SCh','EM','ECh','Genotype','Comment','MM','DD','MM','DD','YYYY','Tags','']
dataTypes = [gridlib.GRID_VALUE_STRING] + [gridlib.GRID_VALUE_BOOL] + [gridlib.GRID_VALUE_STRING] * 12 + [gridlib.GRID_VALUE_BOOL]
self.DAMlist = DAMlist(tblpnl, colLabels, dataTypes, enableEdit = True, useValueCleaner=False)
self.DAMlist.SetData([])
self.searchSheet = CustTableGrid(tblpnl, ['']*15, dataTypes, enableEdit = True, useValueCleaner=False)
self.searchSheet.SetColLabelSize(5)
self.resetTablesSize()
tblsizer = wx.BoxSizer(wx.VERTICAL)
lowerSizer = wx.BoxSizer(wx.HORIZONTAL)
btnSizer = wx.BoxSizer(wx.HORIZONTAL)
imageAdd = wx.Image(imgPath +'/t_add.png', wx.BITMAP_TYPE_ANY).ConvertToBitmap()
AddBtn = wx.BitmapButton(tblpnl, wx.ID_ANY, bitmap=imageAdd, size = (imageAdd.GetWidth()+2, imageAdd.GetHeight()+2))
AddBtn.Bind(wx.EVT_BUTTON, self.OnAddRow)
AddBtn.SetToolTipString('Append a new row at the end of the table')
imageRem = wx.Image(imgPath +'/t_rem.png', wx.BITMAP_TYPE_ANY).ConvertToBitmap()
RemBtn = wx.BitmapButton(tblpnl, wx.ID_ANY, bitmap=imageRem, size = (imageRem.GetWidth()+2, imageRem.GetHeight()+2))
RemBtn.Bind(wx.EVT_BUTTON, self.OnRemRow)
RemBtn.SetToolTipString('Remove selected row(s) from the table')
imageDate = wx.Image(imgPath+'/t_calendar.png', wx.BITMAP_TYPE_ANY).ConvertToBitmap()
CalendarBtn = wx.BitmapButton(tblpnl, wx.ID_ANY, bitmap=imageDate, size = (imageDate.GetWidth()+2, imageDate.GetHeight()+2))
CalendarBtn.Bind(wx.EVT_BUTTON, self.OnCalendar)
CalendarBtn.SetToolTipString('Show a calendar dialog to pick a date and fill the search mask')
imageSearch = wx.Image(imgPath+'/t_search.png', wx.BITMAP_TYPE_ANY).ConvertToBitmap()
searchBtn = wx.BitmapButton(tblpnl, wx.ID_ANY, bitmap=imageSearch, size = (imageSearch.GetWidth()+2, imageSearch.GetHeight()+2))
searchBtn.Bind(wx.EVT_BUTTON, self.OnSearch)
searchBtn.SetToolTipString('Search for the keys in the search mask among the currently selected tag')
imageApply = wx.Image(imgPath+'/t_apply.png', wx.BITMAP_TYPE_ANY).ConvertToBitmap()
ApplyBtn = wx.BitmapButton(tblpnl, wx.ID_ANY, bitmap=imageApply, size = (imageApply.GetWidth()+2, imageApply.GetHeight()+2))
ApplyBtn.Bind(wx.EVT_BUTTON, self.OnApplyMods)
ApplyBtn.SetToolTipString('Apply the values in the search mask to all the currently checked rows')
imageCheckAll = wx.Image(imgPath+'/t_checkall.png', wx.BITMAP_TYPE_ANY).ConvertToBitmap()
CheckAllBtn = wx.BitmapButton(tblpnl, wx.ID_ANY, bitmap=imageCheckAll, size = (imageCheckAll.GetWidth()+2, imageCheckAll.GetHeight()+2))
CheckAllBtn.Bind(wx.EVT_BUTTON, self.OnCheckAll)
CheckAllBtn.SetToolTipString('Check / Uncheck all the currently visible rows')
imageShowAll = wx.Image(imgPath+'/t_showall.png', wx.BITMAP_TYPE_ANY).ConvertToBitmap()
ShowAllBtn = wx.BitmapButton(tblpnl, wx.ID_ANY, bitmap=imageShowAll, size = (imageShowAll.GetWidth()+2, imageShowAll.GetHeight()+2))
ShowAllBtn.Bind(wx.EVT_BUTTON, self.OnSelectTag)
ShowAllBtn.SetToolTipString('Exit search mode and restore view')
btnSizer.Add(AddBtn, 0 ,wx.LEFT | wx.RIGHT, 1)
btnSizer.Add(RemBtn, 0 ,wx.LEFT | wx.RIGHT, 1)
btnSizer.Add(wx.StaticLine(tblpnl, wx.ID_ANY, size=(1,28),style = wx.LI_VERTICAL),0,wx.LEFT | wx.RIGHT, 1)
btnSizer.Add(wx.StaticLine(tblpnl, wx.ID_ANY, size=(1,28),style = wx.LI_VERTICAL),0,wx.LEFT | wx.RIGHT, 1)
btnSizer.Add(searchBtn, 0 ,wx.LEFT | wx.RIGHT, 1)
btnSizer.Add(ShowAllBtn, 0 ,wx.LEFT | wx.RIGHT, 1)
btnSizer.Add(CheckAllBtn, 0 ,wx.LEFT | wx.RIGHT, 1)
btnSizer.Add(wx.StaticLine(tblpnl, wx.ID_ANY, size=(1,28),style = wx.LI_VERTICAL),0,wx.LEFT | wx.RIGHT, 1)
btnSizer.Add(wx.StaticLine(tblpnl, wx.ID_ANY, size=(1,28),style = wx.LI_VERTICAL),0,wx.LEFT | wx.RIGHT, 1)
btnSizer.Add(CalendarBtn, 0 ,wx.LEFT | wx.RIGHT, 1)
btnSizer.Add(ApplyBtn, 0 ,wx.LEFT | wx.RIGHT, 1)
lowerSizer.Add(self.searchSheet, 1, wx.EXPAND | wx.GROW)
lowerSizer.Add(btnSizer, 0, wx.EXPAND | wx.GROW)
tblsizer.Add(self.DAMlist, 1, wx.EXPAND | wx.GROW)
tblsizer.Add(lowerSizer, 0, wx.EXPAND | wx.GROW)
tblpnl.SetSizer(tblsizer)
return tblpnl
def PageBrowser(self, nb):
"""
Creates the Browsing panel to be add to the notebook
Returns a Panel instance
"""
gap = (1,1)
labels = ('Mon', 'Start', 'End', ' ', 'Mon', 'Start', 'End', ' ', 'Mon', 'Start', 'End', '')
panel = wx.Panel(nb)
#creates all sizers
mainsizer = wx.BoxSizer(wx.HORIZONTAL)
rightsizer = wx.BoxSizer(wx.VERTICAL)
genosizer = wx.BoxSizer(wx.HORIZONTAL)
fgsizer = wx.FlexGridSizer(rows=5, cols=12, vgap=3, hgap=5)
centralsizer = wx.BoxSizer(wx.HORIZONTAL)
dgsizer = wx.FlexGridSizer(rows=4, cols=3, vgap=3, hgap=5)
#creates the static boxes and their sizers
MonBox = wx.StaticBox(panel, wx.ID_ANY, 'Monitors')
monsizer = wx.StaticBoxSizer(MonBox, wx.VERTICAL)
DayBox = wx.StaticBox(panel, wx.ID_ANY, 'Days')
dayboxsizer = wx.StaticBoxSizer(DayBox, wx.VERTICAL)
CommentBox = wx.StaticBox(panel,wx.ID_ANY,'Comment')
commentboxsizer = wx.StaticBoxSizer(CommentBox, wx.VERTICAL)
#creates the Genotype textctrl
# self.BrowsingData[0] genotype
self.BrowsingData.append(wx.TextCtrl(panel, wx.ID_ANY, size=(180,-1)))
genosizer.Add (self.BrowsingData[-1], 0, wx.LEFT | wx.RIGHT, 10)
genosizer.Add (wx.StaticText(panel, wx.ID_ANY, 'Genotype', style=wx.ALIGN_CENTER_VERTICAL),0, wx.LEFT | wx.ALIGN_CENTER_VERTICAL, 5)
#populate the monitor/channel start-end grid
# self.BrowsingData[1][0 to 36]
for i in range (0,12):
fgsizer.Add (wx.StaticText(panel, wx.ID_ANY, labels[i]),0, wx.ALIGN_CENTER)
self.BrowsingData.append([])
for mon in range(0,12):
for txt in range (0,3):
self.BrowsingData[1].append (wx.TextCtrl(panel, wx.ID_ANY, size=(30,-1)))
fgsizer.Add(self.BrowsingData[1][-1])
fgsizer.Add(gap)
monsizer.Add(fgsizer, 0, wx.ALL, 5)
self.BrowsingData.append([])
for i in range (0,2):
dgsizer.AddMany ([ wx.StaticText(panel, -1, ('From:', 'To:')[i]) ]+[gap,gap])
self.BrowsingData[2].append ( wx.SpinCtrl(panel, -1, '', size=(45, -1)) )
self.BrowsingData[2][-1].SetRange(1,12)
dgsizer.Add(self.BrowsingData[2][-1])
self.BrowsingData[2].append ( wx.SpinCtrl(panel, -1, '', size=(45, -1)) )
self.BrowsingData[2][-1].SetRange(1,31)
dgsizer.Add(self.BrowsingData[2][-1])
self.BrowsingData[2].append ( wx.SpinCtrl(panel, -1, '', size=(80, -1)) )
self.BrowsingData[2][-1].SetRange(2000,2020)
dgsizer.Add(self.BrowsingData[2][-1])
dayboxsizer.Add(dgsizer,0, wx.ALL, 5)
#add the MonStaticBox and the daysStaticbox to the horizontal sizer
centralsizer.Add(monsizer,0,wx.EXPAND | wx.ALL, 5 )
centralsizer.Add(dayboxsizer,0,wx.EXPAND | wx.ALL ,5)
#add the comment box
self.BrowsingData.append (wx.TextCtrl(panel, -1,'', size=(200, 100), style=wx.TE_MULTILINE|wx.TE_PROCESS_ENTER))
commentboxsizer.Add(self.BrowsingData[-1], 0, wx.EXPAND | wx.ALL,10)
#add the listbox on the left side of the panel
self.BrowsingData.append(wx.ListBox(panel,wx.ID_ANY))
self.BrowsingData[-1].InsertItems([],0)
self.BrowsingData[-1].Bind(wx.EVT_LISTBOX, self.OnChangeDAMentrySelection)
#put everything in a sizer and return this panel
rightsizer.AddMany([(1,10), genosizer, (1,5),centralsizer, (1,15),(commentboxsizer, 0, wx.EXPAND),(1,10)])
mainsizer.Add(self.BrowsingData[-1],1,wx.EXPAND | wx.TOP | wx.BOTTOM, 15)
mainsizer.Add(rightsizer,3, wx.ALL, 5)
panel.SetSizer(mainsizer)
## self.PopulateBrowser()
return panel
def MakeMenuBar(self):
"""
Makes the Menu Bar
"""
#Gives new IDs to the menu voices in the menubar
ID_FILE_NEW = wx.NewId()
ID_FILE_OPEN = wx.NewId()
ID_FILE_EXPORT = wx.NewId()
ID_FILE_IMPORT = wx.NewId()
ID_FILE_SAVE = wx.NewId()
ID_FILE_SAVE_AS = wx.NewId()
ID_FILE_OPEN_RECENT = wx.NewId()
ID_FILE_CLOSE = wx.NewId()
ID_FILE_EXIT = wx.NewId()
ID_ANAL_TYPE = wx.NewId()
ID_ANAL_CHK = wx.NewId()
ID_ANAL_SHOW = wx.NewId()
ID_HELP_ABOUT = wx.NewId()
ID_ANAL_TEST = wx.NewId()
ID_WIN_DB = wx.NewId()
ID_WIN_ANAL = wx.NewId()
ID_WIN_OPTIONS = wx.NewId()
recent_menu = wx.Menu()
fn_ID = []
for fname in userConfig['RecentFiles']:
fn_ID.append(wx.NewId())
recent_menu. Append( fn_ID[-1], fname)
wx.EVT_MENU(self, fn_ID[-1], partial (self.OnFileOpen, fname))
file_menu = wx.Menu()
file_menu. Append(ID_FILE_NEW, '&New File', 'Create a new file')
file_menu. Append(ID_FILE_OPEN, '&Open File', 'Open a file')
file_menu. Append(ID_FILE_SAVE, '&Save File', 'Save current file')
file_menu. Append(ID_FILE_SAVE_AS, '&Save as...', 'Save current file with new name')
file_menu. AppendSeparator()
file_menu. Append(ID_FILE_IMPORT, 'Import CSV File', 'Import list from CSV File')
file_menu. Append(ID_FILE_EXPORT, 'Export to CSV File', 'Export List to CSV File')
file_menu. AppendSeparator()
file_menu. AppendMenu(ID_FILE_OPEN_RECENT, 'Open Recent Files', recent_menu)
file_menu. Append(ID_FILE_CLOSE, '&Close File', 'Close')
file_menu. Append(ID_FILE_EXIT, 'E&xit Program', 'Exit')
data_type_menu = wx.Menu()
dt_ID = []
for data_type in userConfig['DataTypes']:
dt_ID.append(wx.NewId())
data_type_menu. Append( dt_ID[-1], data_type, data_type, wx.ITEM_RADIO)
wx.EVT_MENU(self, dt_ID[-1], partial (self.OnSelectDataType, data_type))
GUI['datatype'] = userConfig['DataTypes'][0] #default datatype
anal_menu = wx.Menu()
anal_menu. AppendMenu(ID_ANAL_TYPE, 'Data type', data_type_menu )
anal_menu. Append(ID_ANAL_TEST, 'Check Raw Data Files', 'Test for the presence of raw data files')
anal_menu. Append(ID_ANAL_CHK, 'Fetch &Raw Data', 'Fetch Raw Data for this table')
anal_menu. AppendSeparator()
anal_menu. Append(ID_ANAL_SHOW, 'Send Data to Analysis', 'Starts analysis window with current data')
anal_menu.FindItemById(ID_ANAL_SHOW).Enable(self.SiblingMode)
window_menu = wx.Menu()
window_menu. Append(ID_WIN_DB, 'Database', 'Show the database window')
window_menu. Append(ID_WIN_ANAL, 'Analysis', 'Show the analysis window')
window_menu. Append(ID_WIN_OPTIONS, 'Options', 'Show the preferences window')
window_menu.FindItemById(ID_WIN_DB).Enable(False)
window_menu.FindItemById(ID_WIN_ANAL).Enable(self.SiblingMode)
#Set Help Menu
help_menu = wx.Menu()
help_menu. Append(ID_HELP_ABOUT, 'Abou&t')
#Create the MenuBar
menubar = wx.MenuBar()
#Populate the MenuBar
menubar. Append(file_menu, '&File')
menubar. Append(anal_menu, '&Analysis')
menubar. Append(window_menu, '&Windows')
menubar. Append(help_menu, '&Help')
#and create the menubar
self.SetMenuBar(menubar)
#and the statusbar
self.CreateStatusBar()
self.SetStatusText('Ready.')
#associate Events to the menubar
wx.EVT_MENU(self, ID_FILE_NEW, self.OnFileNew)
wx.EVT_MENU(self, ID_FILE_OPEN, partial (self.OnFileOpen, None))
wx.EVT_MENU(self, ID_FILE_EXPORT, self.OnExportToCSV)
wx.EVT_MENU(self, ID_FILE_IMPORT, self.OnImportFromCSV)
wx.EVT_MENU(self, ID_FILE_SAVE, self.OnFileSave)
wx.EVT_MENU(self, ID_FILE_SAVE_AS, self.OnFileSaveAs)
wx.EVT_MENU(self, ID_FILE_CLOSE, self.OnFileClose)
wx.EVT_MENU(self, ID_FILE_EXIT, self.OnFileExit)
wx.EVT_MENU(self, ID_ANAL_CHK, partial (self.OnAnalysisLoad, False))
wx.EVT_MENU(self, ID_ANAL_TEST, partial (self.OnAnalysisLoad, True))
wx.EVT_MENU(self, ID_ANAL_SHOW, self.OnSendtoAnalysis)
#wx.EVT_MENU(self, ID_WIN_DB, self.OnShowDatabase)
wx.EVT_MENU(self, ID_WIN_ANAL, self.OnShowAnalysis)
wx.EVT_MENU(self, ID_WIN_OPTIONS, self.OnShowOptions)
wx.EVT_MENU(self, ID_HELP_ABOUT, self.OnAbout)
def GetTagName(self):
"""
Get currently selected tag name stripped from the brackets indicating the number of tagged items
"""
sel_tag = self.TagListBox.GetSelection()
if sel_tag != -1:
tag_name = str(self.TagListBox.GetItems()[sel_tag])
cut = tag_name.index('(') - 1
tag_name = tag_name[:cut]
else:
tag_name = 'All'
tag_name = tag_name.replace(';', '.,')
return tag_name
def OnSelectTag(self,event):
"""
Will show only the row marked with the selected tag
"""
tag_name = self.GetTagName()
self.DAMlist.ShowTagged(tag_name)
self.updateListing()
def OnNewTag(self, event):
"""
Add a new tag
"""
tag_name = str(self.newTagBox.GetValue())
tag_name = tag_name.replace(';', '\.,')
if '(' in tag_name or ')' in tag_name:
dlg = wx.MessageDialog(self, 'Brackets are not allowed in the tag name.', 'Error', wx.OK | wx.ICON_INFORMATION)
if dlg.ShowModal() == wx.ID_YES:
dlg.Destroy()
else:
dlg.Destroy()
if tag_name:
#tag_name = ';'+tag_name+';'
self.DAMlist.AddTagToChecked(tag_name)
self.updateTagList()
self.updateListing()
def OnRemoveTag(self, event):
"""
Remove the currently selected tag from the checked items
"""
sel_tag = self.TagListBox.GetSelection()
if sel_tag:
tag_name = self.TagListBox.GetItems()[sel_tag]
cut = tag_name.index('(') - 1
tag_name = tag_name[:cut]
self.DAMlist.RemoveTagFromChecked(tag_name)
self.updateListing()
self.updateTagList()
def OnAddRow(self, event):
"""
Add a new row to the table
"""
#Get the Tagname that the new row will inherit
tag_name = self.GetTagName()
if tag_name == 'All': tag_name = ''
self.DAMlist.AddRow(tag_name)
self.resetTablesSize()
#update the tag list if necessary
sel = self.TagListBox.GetSelection()
self.updateTagList(sel)
self.DAMlist.GoToEnd()
def OnRemRow(self, event):
"""
Remove one or more rows from the table
"""
del_msg = 'You need to check the lines you wish to remove first'
tobeDel = self.DAMlist.GetCheckedRows()
if tobeDel:
del_msg = 'Are you sure you want to delete %s rows from the table?' % len(tobeDel)
btnType = [wx.OK, wx.YES_NO][(tobeDel!=[])]
dlgJoin = wx.MessageDialog(self, del_msg, 'Deleting rows from the table', btnType | wx.ICON_INFORMATION)
ok_delete = (dlgJoin.ShowModal() == wx.ID_YES)
dlgJoin.Destroy()
if ok_delete:
self.DAMlist.DeleteRows(tobeDel)
self.resetTablesSize()
self.updateTagList()
def OnTodayDate(self,event):
"""
Clicking on the TodayDate the date mask is filled with the today's date
"""
today = datetime.date.today()
self.searchSheet.data[-1][8] = int(today.month)
self.searchSheet.data[-1][9] = int(today.day)
self.searchSheet.data[-1][10] = int(today.month)
self.searchSheet.data[-1][11] = int(today.day)
self.searchSheet.data[-1][12] = int(today.year)
def OnApplyMods(self, event):
"""
Clicking on the Apply button will fill all selected rows with the
data in the search mask
"""
searchString = self.searchSheet.GetData()[-1]
somethingChanged = self.DAMlist.UpdateChecked(searchString)
if somethingChanged:self.updateListing()
def OnFileNew(self,event):
"""
Creates a new DAL file
"""
#ADD support for self.fileIsModfied
self.filename = ''
self.DAMlist.Empty()
self.updateListing()
###self.PopulateBrowser()
self.SetTitle( 'PySolo ' + pySoloVersion + ' - Database' )
def OnFileOpen(self, filename=None, event=None):
"""
Open a previously saved DAL file
"""
joiningDAMlist = False
if self.DAMlist.hasValues():
dlgJoin = wx.MessageDialog(self, 'A file is already open. Do you want to join more data to the current ones?', 'Opening or joining', wx.YES_NO | wx.ICON_INFORMATION)
joiningDAMlist = (dlgJoin.ShowModal() == wx.ID_YES)
dlgJoin.Destroy()
if not filename:
wildcard = 'DAM list files (*.dal)|*.dal|All files (*.*)|*.*'
dlg = wx.FileDialog(self, 'Open DAM list file...', defaultDir=userConfig['DAMoutput'], style=wx.OPEN, wildcard=wildcard)
if dlg.ShowModal() == wx.ID_OK:
self.filename = dlg.GetPath()
dlg.Destroy()
if not joiningDAMlist: self.DAMlist.Empty()
self.ReadFile()
self.SetTitle(self.title + ' -- ' + self.filename)
self.updateListing()
self.PopulateBrowser()
else:
if not joiningDAMlist: self.DAMlist.Empty()
self.filename = filename
self.ReadFile()
self.SetTitle(self.title + ' -- ' + self.filename)
self.updateListing()
self.PopulateBrowser()
def OnFileClose(self, event):
"""
Closing current file
"""
self.DAMlist.Empty()
#self.ReadFile()
self.SetTitle(self.title)
self.updateListing()
self.PopulateBrowser()
self.updateTagList()
def OnFileSave(self, event):
"""
Save away the DAMlist as DAL file
"""
if self.filename != '':
# Open the file for write, write, close
filehandle=open(os.path.join(self.dirname, self.filename),'w')
cPickle.dump(self.DAMlist.GetData(), filehandle)
filehandle.close()
self.SetStatusText('File Succesfully saved.')
else:
self.OnFileSaveAs(None)
def OnFileSaveAs(self, event):
"""
Save away the DAMlist as DAL file
"""
wildcard = 'DAM list files (*.dal)|*.dal|All files (*.*)|*.*'
dlg = wx.FileDialog(self, 'Choose a file', self.dirname, '', wildcard, wx.SAVE | wx.OVERWRITE_PROMPT)
if dlg.ShowModal() == wx.ID_OK:
# Open the file for write, write, close
self.filename=dlg.GetFilename()
if '.dal' not in self.filename: self.filename = self.filename + '.dal'
self.dirname=dlg.GetDirectory()
filehandle=open(os.path.join(self.dirname, self.filename),'w')
cPickle.dump(self.DAMlist.GetData(), filehandle)
filehandle.close()
self.SetStatusText('File Succesfully saved.')
dlg.Destroy()
def OnFileExit(self, event):
"""
On Exit program
"""
#add support for self.fileIsModfied
dlg = wx.MessageDialog(self, 'Are you sure you want to exit from the program?', 'Closing', wx.YES_NO | wx.ICON_QUESTION)
if dlg.ShowModal() == wx.ID_YES:
dlg.Destroy()
self.Close(True)
else:
dlg.Destroy()
def OnClose(self, event):
"""
Hides or Closes the frame according to which modality the program is running
"""
if not self.SiblingMode:
self.Destroy()
elif self.SiblingMode and self.BrotherFrame.IsShown():
self.Show(False)
else:
self.Destroy()
self.BrotherFrame.Destroy()
def OnSelectDataType(self, data_type = None, event = None):
"""
We select which data type to use
"""
#global GUI
GUI['datatype'] = data_type
def OnAnalysisLoad(self, checkOnlyFiles = False, evt = None):
"""
Called when we want to load the raw data, creates the dad file and save it
"""
self.DAM = []
monrange = ''
inputPath = userConfig['DAMinput'][:]
if self.DAMlist.ControRowsSyntax():
for row in self.DAMlist.GetData():
if row[1]: # if the line is checked
if '/' not in str(row[2]) and (int(row[4]) - int(row[2]) > 0): # if we are spanning more than one monitor with the wrong syntax
for mon in range (int(row[2]), int(row[4])+1): monrange += str(mon)+'/'
mon_num = int(row[4]) - int(row[2])
row[3] = (str(row[3]) +'/'+'1/'*(mon_num))[0:-1]
row[5] = '32/'+ '32/'* (mon_num -1) + str(row[5])
row[2] = row[4] = monrange[0:-1]
#we create one object for every checked line in the database. We then put objects in a list.
self.DAM.append (DAMslice(row[2], row[3], row[5], row[6], row[7], row[8], row[9], row[10], row[11], row[12]))
#DAMslice(mon, sch, ech, genotype, comment, smont, sd, emont, eday, year, version=pySoloVersion)
datatype = userConfig['DAMtype'] #Channel, Monitor, pvg_distance, pvg_beam
if datatype == 'Monitor' or datatype == 'pvg_beam' or datatype == 'pvg_distance':
self.LoadRawDataMonitor(inputPath, checkOnlyFiles)
elif datatype == 'Channel' and GUI['datatype'] == 'TANK':
self.LoadRawDataTank(inputPath, checkOnlyFiles)
elif datatype == 'Channel' and GUI['datatype'] == 'Regular':
self.LoadRawDataChannel(inputPath, checkOnlyFiles)
elif datatype == 'Channel' and GUI['datatype'] == 'Video':
print ("NOT SUPPORTED")
else:
dlg = wx.MessageDialog(self, 'Please, check your entries.\nSome values are missing or no rows are checked.', 'Error', wx.OK | wx.ICON_INFORMATION)
dlg.ShowModal()
dlg.Destroy()
def OnSendtoAnalysis(self, event):
"""
Called when we want to pass the currently analyse data to Anal
"""
if not(self.DAM):
self.BrotherFrame.Show(True)
dlg = wx.MessageDialog(self,
'Data Not Ready.\nYou need to load the raw data first!', 'Error.',
wx.OK | wx.ICON_INFORMATION)
dlg.ShowModal()
dlg.Destroy()
if self.BrotherFrame.IsActive and self.DAM:
self.BrotherFrame.Show(True)
self.BrotherFrame.PassData(self.DAM)
def OnShowAnalysis(self, event):
"""
Called when we want to pass the currently analyse data to Anal
"""
if self.BrotherFrame.IsActive:
self.BrotherFrame.Show(True)
def OnShowOptions(self, event):
"""
From Menu: Creates and shows the Option Panel
"""
try:
self.OptionPanel.Show(True)
except:
from pysolo_options import pySolo_OptionPanel
self.OptionPanel = pySolo_OptionPanel(self)
self.OptionPanel.Show(True)
def OnImportFromCSV(self,event):
"""
Import a list from a CSV file
"""
csv = ''
self.DAMlist.Empty()
wildcard = 'CSV files (*.csv)|*.csv|All files (*.*)|*.*'
dlg = wx.FileDialog(self, 'Open CSV file...', os.getcwd(), style=wx.OPEN, wildcard=wildcard)
if dlg.ShowModal() == wx.ID_OK:
self.filename = dlg.GetPath()
try:
filehandle = open(self.filename, 'r')
csv = filehandle.read()
filehandle.close()
except cPickle.UnpicklingError:
wx.MessageBox('%s is not a valid file.' % self.filename, 'oops!', style=wx.OK|wx.ICON_EXCLAMATION)
self.SetTitle(self.title + ' -- ' + self.filename)
dlg.Destroy()
##TODO: check the importing from csv##
for row in csv.split('\n')[:-1]:
row_split = row.split(',')
for i in range(len(row_split)):
try:
row_split[i]=int(row_split[i])
except:
pass
self.DAMlist.append(row_split)