Complete Matlab pipeline for large scale calcium imaging data analysis

Tools to work with Allen Inst CCF data in matlab

CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnal…

A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.

A GUI and library for doing multi-fiber photometry

TENASPIS

Code for Remedios, Kennedy et al "Social behaviour shapes hypothalamic neural ensemble representations of conspecific sex"

Code repository for analysis routines detailed in the Resendez et al., 2016 Nature Protocols manuscript

Code to call CNMFe through CaImAn or MATLAB

In vivo GCamp behavioral and data processing functions/scripts in MATLAB