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@BIONF

BIONF

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  1. PhyloProfile PhyloProfile Public

    A phylogenetic profile analysis tool

    R 34 10

  2. fDOG fDOG Public

    Feature-aware Directed OrtholoG search

    Python 10 3

  3. HaMStR HaMStR Public

    Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

    Perl 9 2

  4. FAS FAS Public

    FAS - Tool for Feature Architecture Similarity calculation

    Python 6 1

  5. protTrace protTrace Public

    A simulation based framework to estimate the evolutionary traceability of protein.

    Python 5 4

  6. RScaffolder RScaffolder Public

    Multi-Reference Assisted Bacterial Genome Scaffolder

    Python 3 1

Repositories

Showing 10 of 36 repositories
  • taXaminer Public Forked from fdarthen/taXaminer

    Interactive exploration of biodiverse genome assemblies

    Python 2 MIT 2 0 0 Updated Mar 28, 2025
  • Jupyter Notebook 0 2 0 1 Updated Mar 27, 2025
  • fDOG Public

    Feature-aware Directed OrtholoG search

    Python 10 GPL-3.0 3 4 0 Updated Mar 24, 2025
  • PhyloProfile Public

    A phylogenetic profile analysis tool

    R 34 10 8 0 Updated Mar 21, 2025
  • FAS Public

    FAS - Tool for Feature Architecture Similarity calculation

    Python 6 GPL-3.0 1 3 0 Updated Mar 14, 2025
  • XspecT2 Public

    XspecT is a very fast, memory efficient and easy-to-use tool to taxonomically classify raw sequence-data, whole genome assemblies or metagenomes on the species and sub-species level

    Python 0 MIT 1 0 0 Updated Mar 14, 2025
  • dcc2 Public Forked from trvinh/dcc2

    Dynamic core orthologs compilation tool

    Python 1 GPL-3.0 1 0 0 Updated Mar 12, 2025
  • MATT Public Forked from JG98/MATT

    MATT

    JavaScript 1 GPL-3.0 1 0 0 Updated Mar 7, 2025
  • cell_wall Public
    Jupyter Notebook 0 2 0 0 Updated Dec 3, 2024
  • bionf_cookiecutter Public Forked from patrickmineault/true-neutral-cookiecutter

    A minimalist cookiecutter for research and data science projects

    Python 0 GPL-3.0 37 0 0 Updated Nov 8, 2024

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