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@IPMI-ICNS-UKE

IPMI @ UKE

IPMI (Image Processing and Medical Informatics) is a working group at the IAM (Institute for Applied Medical Informatics) of the UKE Hamburg

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  1. sparsam Public

    Deep Learning on SPARSely Annotated Medical-data

    Python 6 1

  2. DeepTICI Public

    Deep learning-based automated TICI (Thrombolysis In Cerebral Infarction) scoring for DSA-based assessment of mechanical thrombolysis response.

    Python 8 5

  3. gdl-fire-4d Public

    General deep learning-based fast image registration framework for clinical thoracic 4D CT data

    Python 40 6

  4. patch-performance Public

    Don't waste your time and money on inefficient patch-based inference!

    Python 6 1

  5. Jurkat_cell_segmentation Public

    First adoption of the reservoir paradigm for microscopy image data processing, here: T cell segmentation in live-cell Calcium image series.

    Python 1 1

  6. TDEntropyDeconvolution Public

    Spatio-temporal image restoration with entropy-based regularization for application to low-SNR fluorescence microscopy image series.

    Python 5 1

Repositories

Showing 10 of 29 repositories
  • CTC-HiL Public
    Python 0 Apache-2.0 0 0 0 Updated Mar 23, 2025
  • NFInteractiveSegmentationBenchmarkingPrivate Public Forked from IPMI-ICNS-UKE/NFInteractiveSegmentationBenchmarking

    This is a private version of the repository with the benchmarking framework for comparing models performing interactive segmentation of Neurofibromas in 3D WB-MRI

    Python 0 MIT 1 0 0 Updated Mar 22, 2025
  • NFInteractiveSegmentationBenchmarking Public

    This repository provides a benchmarking framework for comparing models performing interactive segmentation of Neurofibromas in 3D WB-MRI

    Python 0 MIT 1 0 0 Updated Mar 22, 2025
  • LLaVA-Med Public Forked from microsoft/LLaVA-Med

    Large Language-and-Vision Assistant for Biomedicine, built towards multimodal GPT-4 level capabilities.

    Python 0 232 0 0 Updated Mar 20, 2025
  • NET_CUP Public
    Jupyter Notebook 0 0 0 0 Updated Mar 17, 2025
  • DARTS Public

    A Ca2+ microdomain analysis pipeline for spatio-temporal microscopy imaging

    Python 4 Apache-2.0 0 14 0 Updated Feb 28, 2025
  • 4d-cbct-mc Public

    Monte Carlo simulation of (4D) cone beam computed tomography

    C 7 1 0 1 Updated Dec 10, 2024
  • NFSegmentationPipeline Public

    Neurofibroma segmentation pipeline integrated in 3D Slicer via MONAI Label

    Python 1 MIT 0 0 0 Updated Nov 13, 2024
  • Haematological-Single-Cell-Image-Classification Public
    Python 0 MIT 0 0 0 Updated Oct 24, 2024
  • sparsam Public

    Deep Learning on SPARSely Annotated Medical-data

    Python 6 MIT 1 0 2 Updated Aug 1, 2024
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