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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet Public

    Python 6.5k 1.9k

  2. batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.1k 226

  3. trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 222 20

  4. TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 234 74

  5. basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 144 40

  6. nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 571 105

Repositories

Showing 10 of 83 repositories
  • Python 55 Apache-2.0 9 4 2 Updated Mar 26, 2025
  • napari-labels Public
    Python 0 Apache-2.0 0 0 0 Updated Mar 26, 2025
  • napari-camera Public
    Python 0 Apache-2.0 0 0 0 Updated Mar 26, 2025
  • batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1,124 Apache-2.0 226 39 12 Updated Mar 25, 2025
  • Python 3 Apache-2.0 2 0 0 Updated Mar 24, 2025
  • nnInteractive Public
    Python 89 Apache-2.0 9 2 0 Updated Mar 23, 2025
  • radioactive Public
    Python 0 CC-BY-4.0 0 0 0 Updated Mar 21, 2025
  • LongiSeg Public
    Python 4 Apache-2.0 0 0 0 Updated Mar 21, 2025
  • nnssl Public
    0 0 0 0 Updated Mar 19, 2025
  • LesionLocator Public
    19 1 2 0 Updated Mar 17, 2025

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