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@NTBEL

Nano-Thermal Bioengineering Laboratory at UT Dallas

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  1. DIAMOND Public

    DIAMOND signal analysis

    MATLAB

  2. PARM Public

    PAR2 Activation and calcium signaling Reaction Model in PySB

    Python

  3. diffusion-fit Public

    Extract estimates of dye/peptide diffusion coefficients and loss rates from a time-sequence of fluorescence images.

    Python

  4. extracellular-models Public

    Reaction-diffusion models to simulate the dynamics of fluorescent dyes and peptides in the brain extracellular space implemented using the extracellular simulator in NEURON.

    Python 1

  5. NP-array-heating-simulator Public

  6. pharmacodynamic-response-models Public

    Collection of pharmacodynamic response models, including dose-response, inhibitor-response, and various receptor-response models that can be fit to response data.

    Python 1 2

Repositories

Showing 10 of 14 repositories
  • pharmacodynamic-response-models Public

    Collection of pharmacodynamic response models, including dose-response, inhibitor-response, and various receptor-response models that can be fit to response data.

    Python 1 MIT 2 0 0 Updated Jul 22, 2024
  • diffusion-fit Public

    Extract estimates of dye/peptide diffusion coefficients and loss rates from a time-sequence of fluorescence images.

    Python 0 MIT 0 3 0 Updated Apr 26, 2023
  • PARM Public

    PAR2 Activation and calcium signaling Reaction Model in PySB

    Python 0 MIT 0 0 0 Updated Feb 24, 2023
  • peptide-property-app Public

    Used peptides.py to predict peptide properties from the amino acid sequence.

    Python 0 MIT 1 0 0 Updated Feb 21, 2023
  • parm-streamlit-app Public

    A streamlit app to interact with PARM and test running the model.

    Python 0 MIT 0 0 0 Updated Feb 21, 2023
  • extracellular-models Public

    Reaction-diffusion models to simulate the dynamics of fluorescent dyes and peptides in the brain extracellular space implemented using the extracellular simulator in NEURON.

    Python 0 MIT 1 0 0 Updated Jan 19, 2023
  • lammps_output_analysis Public

    Python tools to parse, post-process, and analyze outputs from LAMMPS commands.

    Jupyter Notebook 0 MIT 2 2 0 Updated Dec 7, 2022
  • aunp-fragmentation-model-and-fitting Public archive

    Fragmentation distribution fitting and model analysis for our paper Kang et al. J. Phys. Chem. C 2021, 125, 48, 26718–26730

    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 9, 2022
  • ecs-image-to-mcell Public
    Makefile 0 MIT 0 0 0 Updated Nov 3, 2022
  • roi-plotter Public

    A streamlit app to read cell ROI data from csv files and plot the fluorescence traces.

    Python 0 MIT 1 0 0 Updated Oct 18, 2022
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