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@ablab

Ex Center for Algorithmic Biotechnology

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  1. spades Public

    SPAdes Genome Assembler

    C++ 798 146

  2. quast Public

    Genome assembly evaluation tool

    AMPL 422 80

Repositories

Showing 10 of 30 repositories
  • spades Public

    SPAdes Genome Assembler

    C++ 798 146 260 4 Updated Mar 21, 2025
  • nerpa Public
    C++ 16 4 0 3 Updated Mar 20, 2025
  • IsoQuant Public

    Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

    Python 160 15 66 2 Updated Mar 18, 2025
  • quast-website Public

    Django web interface for Quast assembly assessment tool: https://github.com/ablab/quast

    HTML 5 2 0 0 Updated Nov 14, 2024
  • quast Public

    Genome assembly evaluation tool

    AMPL 422 80 75 3 Updated Nov 14, 2024
  • rnaquast Public

    Quality assessment of de novo transcriptome assemblies from RNA-Seq data

    Python 21 6 8 0 Updated Oct 25, 2024
  • metarna Public
    Python 0 0 0 2 Updated Jul 6, 2023
  • orf-search Public

    ORF search on assembly graphs

    Python 7 4 0 0 Updated Apr 12, 2023
  • metaGT Public

    Pipeline for metagenome and metatranscriptome joint assembly

    Nextflow 20 MIT 2 2 0 Updated Mar 3, 2023
  • VerityMap Public
    C++ 34 GPL-3.0 5 10 1 Updated Feb 22, 2023
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