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@bowang-lab

WangLab @ U of T

BoWang's Lab at University of Toronto

Popular repositories Loading

  1. MedSAM MedSAM Public

    Segment Anything in Medical Images

    Jupyter Notebook 3.4k 472

  2. scGPT scGPT Public

    Jupyter Notebook 1.2k 246

  3. U-Mamba U-Mamba Public

    U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation

    Python 770 77

  4. MedRAX MedRAX Public

    MedRAX: Medical Reasoning Agent for Chest X-ray

    Python 551 109

  5. Graph-Mamba Graph-Mamba Public

    Graph-Mamba: Towards Long-Range Graph Sequence Modelling with Selective State Spaces

    Python 273 36

  6. MedSAMSlicer MedSAMSlicer Public

    3D Slicer Plugin for Segment anything in medical images

    Python 215 25

Repositories

Showing 10 of 49 repositories
  • AMOS-MM-Solution Public

    Solution to the AMOS-MM challenge

    Python 6 MIT 0 1 0 Updated Mar 29, 2025
  • IntegrAO Public

    Integrate Any Omics: Towards genome-wide data integration for patient stratification

    Jupyter Notebook 45 MIT 9 0 0 Updated Mar 18, 2025
  • MedRAX Public

    MedRAX: Medical Reasoning Agent for Chest X-ray

    Python 551 Apache-2.0 109 4 0 Updated Mar 11, 2025
  • MorphoDiff Public

    MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions based on perturbation encoding.

    Python 9 Apache-2.0 2 0 0 Updated Mar 10, 2025
  • AGILE Public

    AGILE Platform: A Deep Learning-Powered Approach to Accelerate LNP Development for mRNA Delivery

    Python 34 MIT 4 2 0 Updated Feb 16, 2025
  • scGPT-spatial Public
    Jupyter Notebook 82 MIT 9 5 0 Updated Feb 13, 2025
  • AgentTutorial Public
    Jupyter Notebook 7 Apache-2.0 0 0 0 Updated Feb 3, 2025
  • Orthrus Public

    Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.

    Python 59 MIT 8 3 0 Updated Jan 21, 2025
  • genomic-FM Public
    Python 22 3 1 0 Updated Jan 20, 2025
  • ECG-FM Public

    An electrocardiogram analysis foundation model.

    Jupyter Notebook 138 MIT 8 1 0 Updated Jan 7, 2025
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