Skip to content
@flatironinstitute

Flatiron Institute

Popular repositories Loading

  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 650 375

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 329 84

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 315 83

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 255 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 149 93

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 119 21

Repositories

Showing 10 of 191 repositories
  • lineage_viewer Public

    Graphical interface for editing a lineage and viewing related microscopy images

    Python 1 BSD-3-Clause 1 0 0 Updated Mar 27, 2025
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    TypeScript 53 Apache-2.0 9 24 0 Updated Mar 27, 2025
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    Python 2 2,406 0 8 Updated Mar 26, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 650 GPL-2.0 375 87 (1 issue needs help) 12 Updated Mar 26, 2025
  • nixpack Public

    nix+spack = nixpack (spanix?)

    Nix 46 MIT 4 1 4 Updated Mar 26, 2025
  • OpenMM_FI_2025 Public
    Jupyter Notebook 1 0 0 0 Updated Mar 26, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    Python 94 MIT 9 111 (1 issue needs help) 6 Updated Mar 25, 2025
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    Python 0 1 0 0 Updated Mar 25, 2025
  • stan-playground Public

    Run Stan models in the browser

    TypeScript 42 Apache-2.0 1 11 1 Updated Mar 25, 2025
  • nbfiddle Public
    TypeScript 1 Apache-2.0 0 0 0 Updated Mar 24, 2025
View all repositories

Most used topics

Loading…