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  1. seglh-cnv seglh-cnv Public

    Scripts and docker images to run CNV pipelines

    R 3 1

  2. dnanexus_swiss_army_SNP_bcftools_filter dnanexus_swiss_army_SNP_bcftools_filter Public

    This repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks

    Shell 2

  3. automate_demultiplex automate_demultiplex Public

    Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

    Python 1 2

  4. dnanexus_ED_cnv_calling dnanexus_ED_cnv_calling Public

    Performs CNV calling using ExomeDepth.

    Shell 1

  5. seglh-naming seglh-naming Public

    SEGLH naming schemes

    Python 1 1

  6. WGS_puberty_CNVs WGS_puberty_CNVs Public

    Scripts for filtering WGS Puberty SV data

    1

Repositories

Showing 10 of 193 repositories
  • automate_demultiplex Public

    Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

    Python 1 2 14 4 Updated Mar 24, 2025
  • mokabed Public

    Generates BED files

    Python 0 0 13 2 Updated Mar 20, 2025
  • sophiaCLI_automate Public

    AOI script for automation of Sophia CLI requests

    Python 0 0 0 0 Updated Mar 14, 2025
  • 0 MIT 0 0 1 Updated Mar 10, 2025
  • SCIP_preprocessing Public

    Preprocessing of data for SCIP runs, from FASTQs to mpileup files

    0 0 0 0 Updated Feb 26, 2025
  • bedmakerGUI Public
    Python 0 0 1 0 Updated Feb 20, 2025
  • SNP_haplotyper Public

    BASHer (BiAllellic SNP Haplotyper). This script filters and classifies SNPs for SNP Array data

    Python 0 0 1 5 Updated Feb 19, 2025
  • seglh-naming Public

    SEGLH naming schemes

    Python 1 Apache-2.0 1 2 0 Updated Feb 17, 2025
  • SCIP_DNAnexus Public

    DNAnexus app which runs the SCIP python script in a docker container, predicting fetal sickle cell status and outputting an HTML report

    0 0 0 0 Updated Feb 17, 2025
  • SCIP Public
    0 0 0 0 Updated Feb 14, 2025

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