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dnanexus_swiss_army_SNP_bcftools_filter
dnanexus_swiss_army_SNP_bcftools_filter PublicThis repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks
Shell 2
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automate_demultiplex
automate_demultiplex PublicScripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
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dnanexus_ED_cnv_calling
dnanexus_ED_cnv_calling PublicPerforms CNV calling using ExomeDepth.
Shell 1
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Repositories
- automate_demultiplex Public
Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
- pre_basher_filter Public
- bedmakerGUI Public
- SNP_haplotyper Public
BASHer (BiAllellic SNP Haplotyper). This script filters and classifies SNPs for SNP Array data
- SCIP_DNAnexus Public
DNAnexus app which runs the SCIP python script in a docker container, predicting fetal sickle cell status and outputting an HTML report