1 Pull request merged by 1 person

• Update README.md

  #1518 merged Mar 26, 2025

5 Pull requests opened by 4 people

• Update preprocessing subworkflow to fix linting block on trimming

  #1523 opened Mar 21, 2025

• Fix naming of GFFREAD outputs leading to null.gtf

  #1526 opened Mar 24, 2025

• Json schema improvements

  #1528 opened Mar 26, 2025

• ARM Megatests

  #1529 opened Mar 26, 2025

• Add ARM CI tests

  #1530 opened Mar 26, 2025

4 Issues opened by 4 people

• Is there an way to retrieve a list of download link for all singularity images required, by which I can manually download these images easier.

  #1532 opened Mar 27, 2025

• JSON schema: Rnaseq

  #1531 opened Mar 26, 2025

• Update to MultiQC 1.27.1

  #1527 opened Mar 26, 2025

• Salmon quantification output is missing genes when using gff3 annotation

  #1524 opened Mar 24, 2025

8 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• "Local" nf-core modules without singularity container builds cause issues

  #1516 commented on Mar 21, 2025 • 0 new comments

• make trimming input reliant on fq lint output

  #1514 commented on Mar 21, 2025 • 0 new comments

• Improvements for processing prokaryotic datasets using the nf-core/rnaseq pipeline

  #1512 commented on Mar 24, 2025 • 0 new comments

• RSeQC Infer Experiment fails with --bam-csi-index enabled

  #1517 commented on Mar 24, 2025 • 0 new comments

• Add additional FastQC step after optional BBSplit and/or SortMeRNA

  #1276 commented on Mar 24, 2025 • 0 new comments

• Extra arguments from STAR-RSEM

  #1513 commented on Mar 25, 2025 • 0 new comments

• Container configs

  #1515 commented on Mar 26, 2025 • 0 new comments

• updated the conda package version specification for Perl for the local module gtf2bed

  #1521 commented on Mar 21, 2025 • 0 new comments