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Okinawa Institute of Science & Technology

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  1. Usiigaci Usiigaci Public

    Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

    Jupyter Notebook 195 68

  2. LaTeX-templates LaTeX-templates Public

    Graduate School LaTeX templates for Lab rotation proposal + report, OIST beamer and Thesis + thesis proposal

    63 57

  3. optinist optinist Public

    calcium imaging pipeline tool

    TypeScript 40 13

  4. DenseObjectDetection DenseObjectDetection Public

    Detection of objects in an image using segmentation

    Python 34 14

  5. DenseObjectAnnotation DenseObjectAnnotation Public

    Tool to annotate objects in images.

    JavaScript 19 8

  6. course-scheduler course-scheduler Public

    Python code to generate course schedules for the Graduate School

    Python 13 6

Repositories

Showing 10 of 173 repositories
  • NEXTNetR Public
    C++ 0 GPL-3.0 0 0 0 Updated Apr 12, 2025
  • emevo Public

    Simluate Embodied Evolution of Agents

    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Apr 11, 2025
  • Oikopleuradioica_genomeannotation Public

    Genome annotation of Oikopleura dioica from different geographical locations

    Shell 1 0 1 0 Updated Apr 11, 2025
  • NEXTNet Public

    C++ implementation of the NEXT-Net algorithm for efficient simulation of epidemics on complex networks

    C++ 0 LGPL-3.0 0 0 0 Updated Apr 10, 2025
  • optinist Public

    calcium imaging pipeline tool

    TypeScript 40 GPL-3.0 13 50 9 Updated Apr 10, 2025
  • smartphone-robot-firmware Public

    Firmware for rp2040 used by smartphone-robots

    C 0 0 0 0 Updated Apr 7, 2025
  • smartphone-robot-cad Public

    All 3D CAD and PCB design files for smartphone-robot project.

    Python 0 Apache-2.0 0 1 0 Updated Apr 4, 2025
  • BioinfoUgrp Public

    OIST Bioinfo user group

    Shell 8 2 1 0 Updated Apr 4, 2025
  • BioinfoUgrp_UnixGoodies_Images Public

    Singularity images with cool Unix tools to be exported as modules in HPC clusters

    Dockerfile 3 0 3 0 Updated Apr 3, 2025
  • iSciComp Public

    JupyterBook: Introduction to Scientific Computation

    Jupyter Notebook 0 CC0-1.0 0 0 0 Updated Mar 28, 2025
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